Designing sequences in the HP model


Click here to download a tar archive of the designing sequences and their structures for 4 <= N <= 25.

========================== README ===============================

ARTICLE INFORMATION

All Authors: Anders Irbäck, Carl Troein

Title: Enumerating Designing Sequences in the HP Model

Journal: Journal of Biological Physics 28, 1-15 (2002)


DEPOSIT INFORMATION

Description: This is a tarball containing all the designing sequences
             and their ground states for the HP model for 4 <= N <= 25
             in a plain text format.

Total No. of Files: One tar/gzip archive.

Filenames: HP_designing.tar.gz, containing files named HPnXX.txt

Filetypes: Each HPnXX.txt file contains all designable conformations
           and designing sequence for N = 'XX'. Each line either contains
           a conformation described by N-1 of the letters 'UDRL', or a
           sequence that designs the preceeding conformations. Lines
           with sequences begin with two spaces, followed by a sequence
           specified by N letters ('H' or 'P'), followed by a single
           space and finally the ground state energy as a decimal number.
           All conformations start with U and the first turn is to the
           right.

Source code: The C/C++ programs used to generate the files, as
             well as some programs used to analyze the data are
             available upon request.

Contact Information: For questions concerning these files and the programs
                     used to generate them:
                      Carl Troein carl@thep.lu.se
                      phone: +46-46-151712

                     For questions concerning anything else:
                      Anders Irbäck anders@thep.lu.se
                      Complex Systems Division, Department of
                        Theoretical Physics, Lund University
                      Sölvegatan 14A
                      S-223 62 Lund
                      Sweden
                      phone: +46-46-2223493

                     The Complex Systems Division can be found at
                     http://www.thep.lu.se/complex/

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