Designing sequences in the HP model
Click
here to download a tar archive
of the designing sequences and their structures for 4 <= N <= 25.
========================== README ===============================
ARTICLE INFORMATION
All Authors: Anders Irbäck, Carl Troein
Title: Enumerating Designing Sequences in the HP Model
Journal: Journal of Biological Physics 28, 1-15 (2002)
DEPOSIT INFORMATION
Description: This is a tarball containing all the designing sequences
and their ground states for the HP model for 4 <= N <= 25
in a plain text format.
Total No. of Files: One tar/gzip archive.
Filenames: HP_designing.tar.gz, containing files named HPnXX.txt
Filetypes: Each HPnXX.txt file contains all designable conformations
and designing sequence for N = 'XX'. Each line either contains
a conformation described by N-1 of the letters 'UDRL', or a
sequence that designs the preceeding conformations. Lines
with sequences begin with two spaces, followed by a sequence
specified by N letters ('H' or 'P'), followed by a single
space and finally the ground state energy as a decimal number.
All conformations start with U and the first turn is to the
right.
Source code: The C/C++ programs used to generate the files, as
well as some programs used to analyze the data are
available upon request.
Contact Information: For questions concerning these files and the programs
used to generate them:
Carl Troein carl@thep.lu.se
phone: +46-46-151712
For questions concerning anything else:
Anders Irbäck anders@thep.lu.se
Complex Systems Division, Department of
Theoretical Physics, Lund University
Sölvegatan 14A
S-223 62 Lund
Sweden
phone: +46-46-2223493
The Complex Systems Division can be found at
http://www.thep.lu.se/complex/
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