PROFASI  Version 1.5
ContactMap

Options

examples

new_obs ContactMap NHB type HBContact ; file native_hb.list
This creates a new ContactMap observable to track hydrogen bond contacts between the pairs listed in file "native_hb.list". The measurements are going to be referred to as "NHB" in the run.

new_obs ContactMap CaC type CaContact ; file native_cac.list ; opt cutoff 6.0
This creates a new ContactMap observable to track C-alpha contacts between the pairs listed in file "native_cac.list", using a cutoff of 6.0 Angstroems. The "opt cutoff 6.0" can be omitted.

new_obs ContactMap HPC type HPContact ; file native_hp.list
A hydrophobic contact monitor.

See Also
prf::ContactMap

PROFASI: Protein Folding and Aggregation Simulator, Version 1.5
© (2005-2016) Anders Irbäck and Sandipan Mohanty
Documentation generated on Mon Jul 18 2016 using Doxygen version 1.8.2