PROFASI  Version 1.5
Commands for the Monte Carlo

Sweep length, temperature etc.

Conformational updates

There are also switches for each conformational update, Pivot, BGS, Rot, Rotation and Translation. To turn off Pivot for a simulation, use for example, –no-Pivot. To force the use of rigid body updates in single chain simulations, you can use the switches –Rotation –Translation. To specify a switch in the settings file, you write, for instance, "Rotation on".

PROFASI: Protein Folding and Aggregation Simulator, Version 1.5
© (2005-2016) Anders Irbäck and Sandipan Mohanty
Documentation generated on Mon Jul 18 2016 using Doxygen version 1.8.2