Programme for SBW2011

Programme for the 11th Annual Swedish Bioinformatics Workshop for PhD Students and Postdocs at Lund University, September 29-30, 2011.

Thursday 29 September
09.00-10.00	Registration & poster setup Physics lecture hall A, Sölvegatan 14
10.00-12.30	Morning session. Chair: Carl Troein
10.00-10.10	Opening remarks
10.10-11.10	Keynote talk Richard Bonneau, New York University Learning hematopoetic differentiation networks in human and mouse integrated data-sets with focus on Th17 differentiation and function
11.10-11.30	Coffee/tea break
11.30-11.50	Short talk Erica Manesso Dynamics inside the hematopoietic hierarchy in adult mice
11.50-12.10	Short talk Dirk Repsilber Biosignatures from blood: disentangling patterns and cell types in heterogeneous tissue
12.10-12.30	Short talk Christof Winter Improving outcome prediction for cancer patients by network-based ranking of marker genes
12.30-14.30	Lunch Restaurant Ideon, Ole Römers väg 16
14.30-18.00	Afternoon session. Chair: Karl Fogelmark
14.30-15.30	Talk Dag Ahrén How to kill a nematode: a fungal genomics perspective
15.30-15.50	Coffee/tea break
15.50-16.10	Short talk Fredrik Boulund A computational pipeline employing hidden Markov models for the identification of novel antibiotic resistance genes
16.10-16.30	Short talk Anna Johnning The genome of an extensively drug-resistance bacterium
16.30-16.50	Short talk Daniel Larsson Initial stages of viral capsid dissolution studied by molecular simulations
16.50-18.00	Poster session Lobby outside Lecture hall A
19.00-	Workshop dinner Restaurant Brogatan at Lundia, Knut den Stores torg 2

Friday 30 September
09.30-12.30	Morning session. Chair: Stefan Wallin
09.30-10.30	Keynote talk Peter Swain, University of Edinburgh Modelling and measuring stochastic gene expression
10.30-10.50	Short talk Iskra Staneva It works in theory: the binding of peptides to PDZ domains
10.50-11.10	Coffee/tea break
11.10-11.30	Short talk Sebastian Rämisch Computational design of self-assembling leucine-rich repeat proteins
11.30-11.50	Short talk Yasser Gaber Molecular modeling as a rational design tool of an esterase
11.50-12.10	Short talk Olena Ishchuk Parallel evolution in yeast
12.10-12.30	Short talk Henk-Jan Joosten 3DM protein engineering superfamily databases
12.30-12.35	Closing remarks