theplu::yat::omic::BamHeader Class Reference

#include </scratch/bob/jari/tmp/pristine/yat-0.10.x/yat/omic/BamHeader.h>

List of all members.

Public Member Functions
	BamHeader (void)
	Default constructor.
const char *	target_name (size_t tid) const
uint32_t	target_length (size_t tid) const
int32_t	n_targets (void) const

Friends
class	InBamFile
class	OutBamFile

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Detailed Description

Wrapper around bam_header_t struct.

Class is typically created within InBamFile

Since:

New in yat 0.10

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Member Function Documentation

int32_t theplu::yat::omic::BamHeader::n_targets

(

void

)

const

Number of chromosomes

uint32_t theplu::yat::omic::BamHeader::target_length

(

size_t

tid

)

const

Length of chromosome with ID tid

const char* theplu::yat::omic::BamHeader::target_name

(

size_t

tid

)

const

Name of chromosome with ID tid

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The documentation for this class was generated from the following file:

• /scratch/bob/jari/tmp/pristine/yat-0.10.x/yat/omic/BamHeader.h