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yat
0.12.3pre
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This is the complete list of members for theplu::yat::utility::SmithWaterman, including all inherited members.
| cigar(void) const | theplu::yat::utility::SmithWaterman | |
| operator()(const Matrix &dot) | theplu::yat::utility::SmithWaterman | |
| operator()(RandomAccessIterator1 reference_begin, RandomAccessIterator1 reference_end, RandomAccessIterator2 query_begin, RandomAccessIterator2 query_end, double mismatch=0) | theplu::yat::utility::SmithWaterman | |
| position(void) const | theplu::yat::utility::SmithWaterman | |
| score(void) const | theplu::yat::utility::SmithWaterman | |
| SmithWaterman(double gap=0, double open_gap=0) | theplu::yat::utility::SmithWaterman | explicit |
| SmithWaterman(double vertical_gap, double open_vertical_gap, double horizon_gap, double open_horizon_gap) | theplu::yat::utility::SmithWaterman |
1.8.5