This is the complete list of members for theplu::yat::utility::Aligner, including all inherited members.

Aligner(double gap=0, double open_gap=0)	theplu::yat::utility::Aligner	explicit
Aligner(double vertical_gap, double open_vertical_gap, double horizon_gap, double open_horizon_gap)	theplu::yat::utility::Aligner
alignment(size_t i, size_t j) const	theplu::yat::utility::Aligner
cigar(size_t i, size_t j) const	theplu::yat::utility::Aligner
diagonal enum value (defined in theplu::yat::utility::Aligner)	theplu::yat::utility::Aligner
direction enum name	theplu::yat::utility::Aligner
down enum value (defined in theplu::yat::utility::Aligner)	theplu::yat::utility::Aligner
needleman_wunsch(const Matrix &d)	theplu::yat::utility::Aligner
none enum value (defined in theplu::yat::utility::Aligner)	theplu::yat::utility::Aligner
operator()(const Matrix &dot, Matrix &score)	theplu::yat::utility::Aligner
right enum value (defined in theplu::yat::utility::Aligner)	theplu::yat::utility::Aligner
smith_waterman(const Matrix &d)	theplu::yat::utility::Aligner