1 #ifndef theplu_yat_omic_config_bam 2 #define theplu_yat_omic_config_bam 36 #if defined YAT_HAVE_HTSLIB_HTS_H 37 # define YAT_SAM_HEADER "htslib/sam.h" 38 # define YAT_FAIDX_HEADER "htslib/faidx.h" 39 #elif defined YAT_HAVE_BAM_H 40 # define YAT_BAM_HEADER "bam.h" 41 # define YAT_FAIDX_HEADER "faidx.h" 42 # define YAT_SAM_HEADER "sam.h" 43 #elif defined YAT_HAVE_BAM_BAM_H 44 # define YAT_BAM_HEADER "bam/bam.h" 45 # define YAT_FAIDX_HEADER "bam/faidx.h" 46 # define YAT_SAM_HEADER "bam/sam.h" 47 #elif defined YAT_HAVE_SAMTOOLS_BAM_H 48 # define YAT_BAM_HEADER "samtools/bam.h" 49 # define YAT_FAIDX_HEADER "samtools/faidx.h" 50 # define YAT_SAM_HEADER "samtools/sam.h" 53 #ifndef YAT_SAM_HEADER 54 #error This file requires samtools header files and cannot be used when \ 55 yat was configured with switch '--without-htslib'.
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