theplu::yat::omic::BamRead Member List

This is the complete list of members for theplu::yat::omic::BamRead, including all inherited members.

aux(void) const	theplu::yat::omic::BamRead
aux(const char tag[2]) const	theplu::yat::omic::BamRead
aux_append(const char tag[2], char type, int len, uint8_t *data)	theplu::yat::omic::BamRead
aux_del(const char tag[2])	theplu::yat::omic::BamRead
aux_size(void) const	theplu::yat::omic::BamRead
BamRead(void)	theplu::yat::omic::BamRead
BamRead(const BamRead &other)	theplu::yat::omic::BamRead
BamRead(BamRead &&other) noexcept	theplu::yat::omic::BamRead
BamReadIterator (defined in theplu::yat::omic::BamRead)	theplu::yat::omic::BamRead	friend
cigar(void) const	theplu::yat::omic::BamRead
cigar(size_t i) const	theplu::yat::omic::BamRead
cigar(const std::vector< uint32_t > &c)	theplu::yat::omic::BamRead
cigar(const utility::Aligner::Cigar &cigar)	theplu::yat::omic::BamRead
cigar_op(size_t i) const	theplu::yat::omic::BamRead
cigar_oplen(size_t i) const	theplu::yat::omic::BamRead
cigar_str(void) const	theplu::yat::omic::BamRead
core(void) const	theplu::yat::omic::BamRead
core(void)	theplu::yat::omic::BamRead
end(void) const	theplu::yat::omic::BamRead
flag(void) const	theplu::yat::omic::BamRead
flag_bit_is_set(uint16_t x) const	theplu::yat::omic::BamRead
flip_flag_bit(uint16_t x)	theplu::yat::omic::BamRead
get_flag_bit(uint16_t x) const	theplu::yat::omic::BamRead
InBamFile (defined in theplu::yat::omic::BamRead)	theplu::yat::omic::BamRead	friend
left_soft_clipped(const BamRead &bam)	theplu::yat::omic::BamRead	related
less_query_name(const BamRead &lhs, const BamRead &rhs)	theplu::yat::omic::BamRead	related
mpos(void) const	theplu::yat::omic::BamRead
mstrand(void) const	theplu::yat::omic::BamRead
mtid(void) const	theplu::yat::omic::BamRead
name(void) const	theplu::yat::omic::BamRead
name(const std::string &n)	theplu::yat::omic::BamRead
operator=(const BamRead &rhs)	theplu::yat::omic::BamRead
operator=(BamRead &&rhs)	theplu::yat::omic::BamRead
OutBamFile (defined in theplu::yat::omic::BamRead)	theplu::yat::omic::BamRead	friend
pos(void) const	theplu::yat::omic::BamRead
qual(size_t i) const	theplu::yat::omic::BamRead
qual(size_t i, uint8_t q)	theplu::yat::omic::BamRead
right_soft_clipped(const BamRead &bam)	theplu::yat::omic::BamRead	related
same_query_name(const BamRead &lhs, const BamRead &rhs)	theplu::yat::omic::BamRead	related
sequence(void) const	theplu::yat::omic::BamRead
sequence(size_t index) const	theplu::yat::omic::BamRead
sequence(size_t i, uint8_t x)	theplu::yat::omic::BamRead
sequence(const std::string &seq, const std::vector< uint8_t > &qual)	theplu::yat::omic::BamRead
sequence_length(void) const	theplu::yat::omic::BamRead
sequence_str(size_t index) const	theplu::yat::omic::BamRead
set_flag_bit(uint16_t x)	theplu::yat::omic::BamRead
soft_clipped(const BamRead &bam)	theplu::yat::omic::BamRead	related
strand(void) const	theplu::yat::omic::BamRead
swap(BamRead &other)	theplu::yat::omic::BamRead
swap(BamRead &lhs, BamRead &rhs)	theplu::yat::omic::BamRead	related
tid(void) const	theplu::yat::omic::BamRead
unset_flag_bit(uint16_t x)	theplu::yat::omic::BamRead
~BamRead(void)	theplu::yat::omic::BamRead	virtual