1 #ifndef theplu_yat_omic_bam_read_filter 2 #define theplu_yat_omic_bam_read_filter 25 #include <htslib/sam.h> 31 #define BAM_DEF_MASK (BAM_FUNMAP | BAM_FSECONDARY | BAM_FQCFAIL | BAM_FDUP) 66 BamReadFilter(
unsigned char mapQ,
unsigned int filtered_flags=BAM_DEF_MASK,
67 unsigned int required_flags=0);
77 unsigned int filtered_;
78 unsigned int required_;
bool operator()(const BamRead &bam) const
The Department of Theoretical Physics namespace as we define it.
Class holding a bam query.
Definition: BamRead.h:51
Filter bam reads.
Definition: BamReadFilter.h:57
BamReadFilter(unsigned char mapQ, unsigned int filtered_flags=BAM_DEF_MASK, unsigned int required_flags=0)