VcfCompare.h

#ifndef theplu_yat_omic_vcf_compare
#define theplu_yat_omic_vcf_compare

// $Id: VcfCompare.h 3759 2018-10-17 22:54:01Z peter $

/*
  Copyright (C) 2018 Peter Johansson

  The yat library is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License as
  published by the Free Software Foundation; either version 3 of the
  License, or (at your option) any later version.

  The yat library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
  General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with yat. If not, see <http://www.gnu.org/licenses/>.
*/

#include <cstddef>
#include <map>
#include <string>

namespace theplu {
namespace yat {
namespace omic {

  class VcfHeader;
  class VCF;

  class VcfCompare
  {
  public:
    VcfCompare(void);

    VcfCompare(const VcfHeader& hdr);

    bool operator()(const VCF& lhs, const VCF& rhs) const;

  private:
    std::map<std::string, size_t> chr2tid_;
  };

}}}

#endif