theplu::yat::omic::Fasta::Sequence Class Reference

#include <yat/omic/Fasta.h>

Public Types
typedef const char *	const_iterator
	const iterator is a const char*

Public Member Functions
const_iterator	begin (void) const
const_iterator	end (void) const
int	size (void) const
char	operator[] (size_t i) const

Friends
class	Fasta
Sequence	reverse_complement (const Fasta::Sequence &)

Related Functions
(Note that these are not member functions.)
Fasta::Sequence	reverse_complement (const Fasta::Sequence &sequence)
std::ostream &	operator<< (std::ostream &os, const Fasta::Sequence &)
	outpout operator for Fasta:Sequence More...

Detailed Description

Class holding sequence fetch from fasta file.

Class is const and its copy and assignment are shallow, i.e., they only copy pointers to the underlying data and do not alter the underlying data.

Class is typically constructed in functions Fasta::sequence.

Member Function Documentation

begin()

const_iterator theplu::yat::omic::Fasta::Sequence::begin

(

void

)

const

Returns

iterator to first element

end()

const_iterator theplu::yat::omic::Fasta::Sequence::end

(

void

)

const

Returns

iterator to one-passed last element

operator[]()

char theplu::yat::omic::Fasta::Sequence::operator[]

(

size_t

i

)

const

Returns

ith element

size()

int theplu::yat::omic::Fasta::Sequence::size

(

void

)

const

Returns

number of elements contained in sequence

Friends And Related Function Documentation

operator<<()

std::ostream & operator<< ( std::ostream &  os, const Fasta::Sequence &    )

related

outpout operator for Fasta:Sequence

Since

New in yat 0.16

reverse_complement()

Fasta::Sequence reverse_complement ( const Fasta::Sequence &  sequence )

related

Create a new Sequence that reflects the reverse complement of sequence.

See also

dna_reverse_complement

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The documentation for this class was generated from the following file:

• yat/omic/Fasta.h