class holiding data stored in FORMAT and data fields More...

#include <yat/omic/VCF.h>

Public Member Functions
	Data (void)
	Default constructor.

	Data (size_t n)

template<typename T >
void	add (const std::string &key, const std::vector< T > &data)
	T is string, numeric or vector string or numeric.

void	clear (void)

size_t	count (const std::string &key) const

const std::vector< std::string > &	format (void) const

template<typename T >
void	get (const std::string &key, std::vector< T > &data) const
	T is string, numeric or vector string or numeric.

size_t	n_samples (void) const

template<typename T >
void	set (const std::string &key, const std::vector< T > &data)

void	subset (const std::vector< size_t > &index)

Friends
class	VCF

std::ostream &	operator<< (std::ostream &, const VCF::Data &)

Related Functions
(Note that these are not member functions.)
std::ostream &	operator<< (std::ostream &os, const VCF::Data &data)
	output operator for VCF::Data More...

Detailed Description

class holiding data stored in FORMAT and data fields

Constructor & Destructor Documentation

◆ Data()

theplu::yat::omic::VCF::Data::Data ( size_t n )

explicit

Create Data representing n samples

Since: New in yat 0.20

Member Function Documentation

◆ clear()

void theplu::yat::omic::VCF::Data::clear ( void )

Set FORMAT and all data fields to empty string. Number of samples remains unmodified.

◆ count()

size_t theplu::yat::omic::VCF::Data::count ( const std::string & key ) const

Returns: 1 if key exists

◆ format()

const std::vector<std::string>& theplu::yat::omic::VCF::Data::format ( void ) const

FORMAT

Returns: vector of format in the data fields

◆ n_samples()

size_t theplu::yat::omic::VCF::Data::n_samples ( void ) const

Returns: number of samples

Since: New in yat 0.20

◆ set()

template<typename T >

void theplu::yat::omic::VCF::Data::set	(	const std::string &	key,
		const std::vector< T > &	data
	)

T is string, numeric or vector string or numeric

If key exists in FORMAT, replace data with data. Otherwise add data with key; see data(key, data).

Since: New in yat 0.20

◆ subset()

void theplu::yat::omic::VCF::Data::subset ( const std::vector< size_t > & index )

Construct Data representing a subset of samples. The object will have index.size() samples; if index[0] is k, the first sample correspond to the (k+1)th sample in the old object.

Since: New in yat 0.20

Friends And Related Function Documentation

◆ operator<<()

std::ostream & operator<<	(	std::ostream &	os,
		const VCF::Data &	data
	)

Returns: stream

The documentation for this class was generated from the following file:

yat/omic/VCF.h

Public Member Functions

Friends

Related Functions