theplu::yat::omic::VCF::Info Class Reference

class handling the INFO field in an VCF entry More...

#include <yat/omic/VCF.h>

Public Member Functions
	Info (void)=default
	default constructor
void	add (const std::string &key)
template<typename T >
void	add (const std::string &key, const T &value)
void	clear (void)
size_t	count (const std::string &key) const
template<typename T >
void	get (T &result, const std::string &key) const
void	remove (const std::string &key)
	remove Info entry with key key
void	set (const std::string &s)
void	set (std::string &&s)
const std::string &	str (void) const
template<typename T >
void	set (const std::string &key, const T &value)

Friends
class	VCF
std::ostream &	operator<< (std::ostream &, const VCF::Info &)

Related Functions
(Note that these are not member functions.)
std::ostream &	operator<< (std::ostream &os, const VCF::Info &info)
	output operator for VCF::Info More...

Detailed Description

class handling the INFO field in an VCF entry

Member Function Documentation

add() [1/2]

void theplu::yat::omic::VCF::Info::add

(

const std::string &

key

)

Add entry key to semicolon-delimited list of entries.

add() [2/2]

template<typename T >

void theplu::yat::omic::VCF::Info::add	(	const std::string &	key,
		const T &	value
	)

T is either string or numeric or a std::vector with strings or numerics.

clear()

void theplu::yat::omic::VCF::Info::clear

(

void

)

Clear Info field.

count()

size_t theplu::yat::omic::VCF::Info::count

(

const std::string &

key

)

const

Returns

1 if key exists

get()

template<typename T >

void theplu::yat::omic::VCF::Info::get	(	T &	result,
		const std::string &	key
	)		const

get value corresponding to key

T is string, numeric, vector<string> or vector<numeric>

set() [1/3]

void theplu::yat::omic::VCF::Info::set

(

const std::string &

s

)

Set info to s

set() [2/3]

void theplu::yat::omic::VCF::Info::set

(

std::string &&

s

)

Set info to s

set() [3/3]

template<typename T >

void theplu::yat::omic::VCF::Info::set	(	const std::string &	key,
		const T &	value
	)

T is either string or numeric or a std::vector with strings or numerics.

Since

New in yat 0.20

str()

const std::string& theplu::yat::omic::VCF::Info::str

(

void

)

const

Returns

info as a string

Friends And Related Function Documentation

operator<<()

std::ostream & operator<< ( std::ostream &  os, const VCF::Info &  info  )

related

output operator for VCF::Info

Returns

stream

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The documentation for this class was generated from the following file:

• yat/omic/VCF.h