yat
0.21pre
|
This is the complete list of members for theplu::yat::utility::Aligner, including all inherited members.
Aligner(double gap=0, double open_gap=0) | theplu::yat::utility::Aligner | explicit |
Aligner(double vertical_gap, double open_vertical_gap, double horizon_gap, double open_horizon_gap) | theplu::yat::utility::Aligner | |
alignment(size_t i, size_t j) const | theplu::yat::utility::Aligner | |
cigar(size_t i, size_t j) const | theplu::yat::utility::Aligner | |
diagonal enum value (defined in theplu::yat::utility::Aligner) | theplu::yat::utility::Aligner | |
direction enum name | theplu::yat::utility::Aligner | |
down enum value (defined in theplu::yat::utility::Aligner) | theplu::yat::utility::Aligner | |
needleman_wunsch(const MatrixBase &d) | theplu::yat::utility::Aligner | |
none enum value (defined in theplu::yat::utility::Aligner) | theplu::yat::utility::Aligner | |
operator()(const MatrixBase &dot, MatrixMutable &score) | theplu::yat::utility::Aligner | |
right enum value (defined in theplu::yat::utility::Aligner) | theplu::yat::utility::Aligner | |
smith_waterman(const MatrixBase &d) | theplu::yat::utility::Aligner |