This is the complete list of members for theplu::yat::utility::SmithWaterman, including all inherited members.

cigar(void) const	theplu::yat::utility::SmithWaterman
operator()(const MatrixBase &dot)	theplu::yat::utility::SmithWaterman
operator()(RandomAccessIterator1 reference_begin, RandomAccessIterator1 reference_end, RandomAccessIterator2 query_begin, RandomAccessIterator2 query_end, double mismatch=0)	theplu::yat::utility::SmithWaterman
position(void) const	theplu::yat::utility::SmithWaterman
score(void) const	theplu::yat::utility::SmithWaterman
SmithWaterman(double gap=0, double open_gap=0)	theplu::yat::utility::SmithWaterman	explicit
SmithWaterman(double vertical_gap, double open_vertical_gap, double horizon_gap, double open_horizon_gap)	theplu::yat::utility::SmithWaterman