3659 |
13 Aug 07 |
nicklas |
# $Id: base.config.in 2932 2006-11-17 11:29:27Z nicklas $ |
3659 |
13 Aug 07 |
nicklas |
2 |
# |
3675 |
16 Aug 07 |
jari |
# Copyright (C) 2007 Nicklas Nordborg |
3659 |
13 Aug 07 |
nicklas |
4 |
# |
3659 |
13 Aug 07 |
nicklas |
# This file is part of BASE - BioArray Software Environment. |
3659 |
13 Aug 07 |
nicklas |
# Available at http://base.thep.lu.se/ |
3659 |
13 Aug 07 |
nicklas |
7 |
# |
3659 |
13 Aug 07 |
nicklas |
# BASE is free software; you can redistribute it and/or |
3659 |
13 Aug 07 |
nicklas |
# modify it under the terms of the GNU General Public License |
4474 |
05 Sep 08 |
jari |
# as published by the Free Software Foundation; either version 3 |
3659 |
13 Aug 07 |
nicklas |
# of the License, or (at your option) any later version. |
3659 |
13 Aug 07 |
nicklas |
12 |
# |
3659 |
13 Aug 07 |
nicklas |
# BASE is distributed in the hope that it will be useful, |
3659 |
13 Aug 07 |
nicklas |
# but WITHOUT ANY WARRANTY; without even the implied warranty of |
3659 |
13 Aug 07 |
nicklas |
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
3659 |
13 Aug 07 |
nicklas |
# GNU General Public License for more details. |
3659 |
13 Aug 07 |
nicklas |
17 |
# |
3659 |
13 Aug 07 |
nicklas |
# You should have received a copy of the GNU General Public License |
4508 |
11 Sep 08 |
jari |
# along with BASE. If not, see <http://www.gnu.org/licenses/>. |
3659 |
13 Aug 07 |
nicklas |
20 |
# ---------------------------------------- |
3659 |
13 Aug 07 |
nicklas |
21 |
|
3659 |
13 Aug 07 |
nicklas |
22 |
|
3659 |
13 Aug 07 |
nicklas |
# Name of formula to use for intensity calculation |
3659 |
13 Aug 07 |
nicklas |
intensity.genepix Mean FG - Mean BG |
3659 |
13 Aug 07 |
nicklas |
25 |
|
3659 |
13 Aug 07 |
nicklas |
# JEP expression to use for filtering |
3659 |
13 Aug 07 |
nicklas |
filter.expression ch(1) > 100 && ch(2) > 100 |
3659 |
13 Aug 07 |
nicklas |
28 |
|
3659 |
13 Aug 07 |
nicklas |
# LOWESS options |
3659 |
13 Aug 07 |
nicklas |
lowess.fitFraction 0.33 |
3659 |
13 Aug 07 |
nicklas |
lowess.delta 0.1 |
3659 |
13 Aug 07 |
nicklas |
lowess.iterations 4 |
3659 |
13 Aug 07 |
nicklas |
lowess.blockGroup 12 |
3659 |
13 Aug 07 |
nicklas |
34 |
|
3659 |
13 Aug 07 |
nicklas |
35 |
|