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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE appendix PUBLIC |
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"-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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"../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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<!-- |
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$Id$ |
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7 |
|
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Copyright (C) 2007 Jari Häkkinen, Nicklas Nordborg |
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Copyright (C) 2008 Jari Häkkinen |
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|
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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05 Sep 08 |
jari |
as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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18 |
|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 May 07 |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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14 May 07 |
nicklas |
GNU General Public License for more details. |
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23 |
|
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You should have received a copy of the GNU General Public License |
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11 Sep 08 |
jari |
along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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--> |
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|
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<appendix id="appendix.coreplugins"> |
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<?dbhtml filename="coreplugins.html" ?> |
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<title>Core plug-ins shipped with BASE</title> |
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|
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<para> |
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Here is a categorized list of all plug-ins installed with a pristine BASE |
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34 |
installation. Some plug-ins must be configured before use. The |
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35 |
requirements are listed below and configuration samples are given |
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08 Sep 08 |
jari |
36 |
for for plug-ins that supports/requires configurations. Use the |
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06 Dec 07 |
jari |
37 |
right-click menu of the mouse to download these XML files for |
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06 Dec 07 |
jari |
38 |
further import into BASE (see <xref |
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39 |
linkend="plugins.configuration.importexport" />). |
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40 |
</para> |
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41 |
|
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<para> |
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Contributed plug-ins are available at <ulink |
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url="https://baseplugins.thep.lu.se" >https://baseplugins.thep.lu.se |
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45 |
</ulink>. These plug-ins are either developed outside the core team |
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46 |
or require external non-Java compilers and tools. These packages |
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47 |
are excluded from the BASE package to make the installation |
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06 Dec 07 |
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48 |
process somewhat simpler. |
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06 Dec 07 |
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49 |
</para> |
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50 |
|
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51 |
<sect1 id="coreplugins.analyze"> |
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52 |
<title>Core analysis plug-ins</title> |
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53 |
|
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<variablelist> |
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55 |
<varlistentry> |
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<term>BASE 1 plug-in executor</term> |
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<listitem> |
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<para> |
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Simulates the plug-in runner from Base 1.2. Must be configured |
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nicklas |
60 |
before use. The recommended approach is to use the plug-in configuration |
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61 |
file from the BASE 1.2 installation. See <xref linkend="plugins.installation.base1" |
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/> for more information. |
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</para> |
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</listitem> |
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</varlistentry> |
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|
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<varlistentry> |
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<term>External program executor</term> |
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<listitem> |
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<para> |
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Export data from BASE and execute an external program for analysis. |
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24 Oct 11 |
nicklas |
72 |
Afterwards, data can be imported back to BASE. A configuration is needed |
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nicklas |
73 |
to run this plug-in. The plug-in is very flexible and can handle several |
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24 Oct 11 |
nicklas |
74 |
export/import data formats (which can be extended by |
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24 Oct 11 |
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75 |
adding special export/import plug-ins). Here is a list of the built-in |
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24 Oct 11 |
nicklas |
76 |
exporter/importer implementations. |
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06 Dec 07 |
jari |
77 |
</para> |
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24 Oct 11 |
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78 |
|
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24 Oct 11 |
nicklas |
79 |
<itemizedlist> |
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<listitem> |
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24 Oct 11 |
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<para> |
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24 Oct 11 |
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<emphasis>BASEFile exporter for the ExternalProgramExecutor</emphasis>: Exporter implementation |
5820 |
24 Oct 11 |
nicklas |
83 |
that export data in BASE file format. |
5820 |
24 Oct 11 |
nicklas |
84 |
</para> |
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24 Oct 11 |
nicklas |
85 |
</listitem> |
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24 Oct 11 |
nicklas |
86 |
<listitem> |
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24 Oct 11 |
nicklas |
87 |
<para> |
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24 Oct 11 |
nicklas |
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<emphasis>BASEfile importer for the ExternalProgramExecutor</emphasis>: Importer implementation |
5820 |
24 Oct 11 |
nicklas |
89 |
that can import data in BASEfile format. |
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24 Oct 11 |
nicklas |
90 |
</para> |
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24 Oct 11 |
nicklas |
91 |
</listitem> |
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24 Oct 11 |
nicklas |
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<listitem> |
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24 Oct 11 |
nicklas |
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<para> |
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24 Oct 11 |
nicklas |
94 |
<emphasis>BFS exporter for the ExternalProgramExecutor</emphasis>: Exporter implementation |
5820 |
24 Oct 11 |
nicklas |
95 |
that export data in BFS file format. |
5820 |
24 Oct 11 |
nicklas |
96 |
</para> |
5820 |
24 Oct 11 |
nicklas |
97 |
</listitem> |
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24 Oct 11 |
nicklas |
98 |
<listitem> |
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24 Oct 11 |
nicklas |
99 |
<para> |
5820 |
24 Oct 11 |
nicklas |
100 |
<emphasis>BFS importer for the ExternalProgramExecutor</emphasis>: Importer implementation |
5820 |
24 Oct 11 |
nicklas |
101 |
that can import data in BFS file format. |
5820 |
24 Oct 11 |
nicklas |
102 |
</para> |
5820 |
24 Oct 11 |
nicklas |
103 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
104 |
<listitem> |
5820 |
24 Oct 11 |
nicklas |
105 |
<para> |
5820 |
24 Oct 11 |
nicklas |
106 |
<emphasis>File-only importer for the ExternalProgramExecutor</emphasis>: Importer implementation |
5820 |
24 Oct 11 |
nicklas |
107 |
that simply upload all created files to BASE. |
5820 |
24 Oct 11 |
nicklas |
108 |
</para> |
5820 |
24 Oct 11 |
nicklas |
109 |
</listitem> |
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24 Oct 11 |
nicklas |
110 |
</itemizedlist> |
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24 Oct 11 |
nicklas |
111 |
|
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24 Oct 11 |
nicklas |
112 |
<note> |
5820 |
24 Oct 11 |
nicklas |
113 |
<para> |
5820 |
24 Oct 11 |
nicklas |
114 |
This plug-in can in theory handle everything (and more) that the |
5820 |
24 Oct 11 |
nicklas |
115 |
<emphasis>BASE 1 plug-in executor</emphasis> can, except that it doesn't do |
5820 |
24 Oct 11 |
nicklas |
116 |
any translation of field names used in BASE 1. |
5820 |
24 Oct 11 |
nicklas |
117 |
</para> |
5820 |
24 Oct 11 |
nicklas |
118 |
</note> |
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24 Oct 11 |
nicklas |
119 |
|
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06 Dec 07 |
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120 |
</listitem> |
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06 Dec 07 |
jari |
121 |
</varlistentry> |
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06 Dec 07 |
jari |
122 |
|
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06 Dec 07 |
jari |
123 |
<varlistentry> |
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24 Oct 11 |
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124 |
<term>Formula extra value calculator</term> |
4043 |
06 Dec 07 |
jari |
125 |
<listitem> |
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06 Dec 07 |
jari |
126 |
<para> |
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24 Oct 11 |
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127 |
Calculates extra values for a bioassay set using a user-defined |
5820 |
24 Oct 11 |
nicklas |
128 |
formula. No configuration is needed. |
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06 Dec 07 |
jari |
129 |
</para> |
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06 Dec 07 |
jari |
130 |
</listitem> |
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06 Dec 07 |
jari |
131 |
</varlistentry> |
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06 Dec 07 |
jari |
132 |
|
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06 Dec 07 |
jari |
133 |
<varlistentry> |
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24 Oct 11 |
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134 |
<term>Formula filter</term> |
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06 Dec 07 |
jari |
135 |
<listitem> |
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06 Dec 07 |
jari |
136 |
<para> |
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24 Oct 11 |
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137 |
Filters a bioassay set using a user-defined formula. |
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24 Oct 11 |
nicklas |
138 |
No configuration is needed. |
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06 Dec 07 |
jari |
139 |
</para> |
4043 |
06 Dec 07 |
jari |
140 |
</listitem> |
4043 |
06 Dec 07 |
jari |
141 |
</varlistentry> |
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06 Dec 07 |
jari |
142 |
|
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06 Dec 07 |
jari |
143 |
<varlistentry> |
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24 Oct 11 |
nicklas |
144 |
<term>Formula intensity transformer</term> |
4043 |
06 Dec 07 |
jari |
145 |
<listitem> |
4043 |
06 Dec 07 |
jari |
146 |
<para> |
5820 |
24 Oct 11 |
nicklas |
147 |
Creates a new bioassay set with transformed intensity values using a |
5820 |
24 Oct 11 |
nicklas |
148 |
user-defined formula. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
149 |
</para> |
4043 |
06 Dec 07 |
jari |
150 |
</listitem> |
4043 |
06 Dec 07 |
jari |
151 |
</varlistentry> |
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24 Oct 11 |
nicklas |
152 |
|
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29 Jul 09 |
martin |
153 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
154 |
<term>Manual derived bioassay creator</term> |
5035 |
29 Jul 09 |
martin |
155 |
<term>Manual transformation</term> |
5035 |
29 Jul 09 |
martin |
156 |
<listitem> |
5035 |
29 Jul 09 |
martin |
157 |
<para> |
5035 |
29 Jul 09 |
martin |
158 |
Allows a user to manually register an external analysis procedure that has |
5035 |
29 Jul 09 |
martin |
159 |
happened outside of BASE and to register the parameters used and the generated |
5820 |
24 Oct 11 |
nicklas |
160 |
output files. On plug-in create a derived bioassay set and the other |
5820 |
24 Oct 11 |
nicklas |
161 |
a transformation/bioassay set. Both plug-ins need a configuration to |
5820 |
24 Oct 11 |
nicklas |
162 |
register possible parameters and output files. |
5035 |
29 Jul 09 |
martin |
163 |
</para> |
5035 |
29 Jul 09 |
martin |
164 |
</listitem> |
5035 |
29 Jul 09 |
martin |
165 |
</varlistentry> |
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06 Dec 07 |
jari |
166 |
|
4043 |
06 Dec 07 |
jari |
167 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
168 |
<term>Normalisation: Lowess</term> |
4043 |
06 Dec 07 |
jari |
169 |
<listitem> |
4043 |
06 Dec 07 |
jari |
170 |
<para> |
5820 |
24 Oct 11 |
nicklas |
171 |
Normalisation using LOWESS algorithm. No configuration is |
5820 |
24 Oct 11 |
nicklas |
172 |
needed. |
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06 Dec 07 |
jari |
173 |
</para> |
4043 |
06 Dec 07 |
jari |
174 |
</listitem> |
4043 |
06 Dec 07 |
jari |
175 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
176 |
|
4043 |
06 Dec 07 |
jari |
177 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
178 |
<term>Normalisation: Median ratio</term> |
4043 |
06 Dec 07 |
jari |
179 |
<listitem> |
4043 |
06 Dec 07 |
jari |
180 |
<para> |
5820 |
24 Oct 11 |
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181 |
Normalisation based on median ratio. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
182 |
</para> |
4043 |
06 Dec 07 |
jari |
183 |
</listitem> |
4043 |
06 Dec 07 |
jari |
184 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
185 |
</variablelist> |
4043 |
06 Dec 07 |
jari |
186 |
|
4043 |
06 Dec 07 |
jari |
187 |
</sect1> |
4043 |
06 Dec 07 |
jari |
188 |
|
4043 |
06 Dec 07 |
jari |
189 |
<sect1 id="coreplugins.export"> |
4432 |
01 Sep 08 |
jari |
190 |
<title>Core export plug-ins</title> |
4043 |
06 Dec 07 |
jari |
191 |
|
5820 |
24 Oct 11 |
nicklas |
192 |
<para> |
5820 |
24 Oct 11 |
nicklas |
193 |
Unless otherwise noted, none of the export plug-ins |
5820 |
24 Oct 11 |
nicklas |
194 |
need a configuration. |
5820 |
24 Oct 11 |
nicklas |
195 |
</para> |
5820 |
24 Oct 11 |
nicklas |
196 |
|
4043 |
06 Dec 07 |
jari |
197 |
<variablelist> |
4043 |
06 Dec 07 |
jari |
198 |
<varlistentry> |
5035 |
29 Jul 09 |
martin |
199 |
<term>BASEfile exporter</term> |
4043 |
06 Dec 07 |
jari |
200 |
<listitem> |
4043 |
06 Dec 07 |
jari |
201 |
<para> |
5035 |
29 Jul 09 |
martin |
202 |
Exports bioassay set data to serial or matrix BASEfile format. |
4043 |
06 Dec 07 |
jari |
203 |
</para> |
5820 |
24 Oct 11 |
nicklas |
204 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
205 |
</varlistentry> |
5820 |
24 Oct 11 |
nicklas |
206 |
|
5820 |
24 Oct 11 |
nicklas |
207 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
208 |
<term>BFS exporter</term> |
5820 |
24 Oct 11 |
nicklas |
209 |
<listitem> |
4043 |
06 Dec 07 |
jari |
210 |
<para> |
5820 |
24 Oct 11 |
nicklas |
211 |
Exports bioassay set data to BFS format. |
4043 |
06 Dec 07 |
jari |
212 |
</para> |
4043 |
06 Dec 07 |
jari |
213 |
</listitem> |
4043 |
06 Dec 07 |
jari |
214 |
</varlistentry> |
5035 |
29 Jul 09 |
martin |
215 |
|
5035 |
29 Jul 09 |
martin |
216 |
<varlistentry> |
5035 |
29 Jul 09 |
martin |
217 |
<term>GAL exporter</term> |
5035 |
29 Jul 09 |
martin |
218 |
<listitem> |
5035 |
29 Jul 09 |
martin |
219 |
<para> |
5035 |
29 Jul 09 |
martin |
220 |
Exports the features of an array design to a GAL file. |
5035 |
29 Jul 09 |
martin |
221 |
</para> |
5035 |
29 Jul 09 |
martin |
222 |
</listitem> |
5035 |
29 Jul 09 |
martin |
223 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
224 |
|
4043 |
06 Dec 07 |
jari |
225 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
226 |
<term>Help texts exporter</term> |
4043 |
06 Dec 07 |
jari |
227 |
<listitem> |
4043 |
06 Dec 07 |
jari |
228 |
<para> |
4043 |
06 Dec 07 |
jari |
229 |
Exports help texts to an XML file. |
4043 |
06 Dec 07 |
jari |
230 |
</para> |
4043 |
06 Dec 07 |
jari |
231 |
</listitem> |
4043 |
06 Dec 07 |
jari |
232 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
233 |
|
4043 |
06 Dec 07 |
jari |
234 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
235 |
<term>Packed file exporter</term> |
4043 |
06 Dec 07 |
jari |
236 |
<listitem> |
4043 |
06 Dec 07 |
jari |
237 |
<para> |
5820 |
24 Oct 11 |
nicklas |
238 |
Exports files and directories as an archive-file. A configuration |
5820 |
24 Oct 11 |
nicklas |
239 |
is needed to specify compression format. Support for the following |
5820 |
24 Oct 11 |
nicklas |
240 |
formats are included in BASE: |
4043 |
06 Dec 07 |
jari |
241 |
</para> |
5820 |
24 Oct 11 |
nicklas |
242 |
|
5820 |
24 Oct 11 |
nicklas |
243 |
<itemizedlist> |
5820 |
24 Oct 11 |
nicklas |
244 |
<listitem> |
5820 |
24 Oct 11 |
nicklas |
245 |
<para> |
5820 |
24 Oct 11 |
nicklas |
246 |
<emphasis>BZipped TAR archive</emphasis>: Collects the selected files/directories |
5820 |
24 Oct 11 |
nicklas |
247 |
into a TAR file and compress it with BZIP2. |
5820 |
24 Oct 11 |
nicklas |
248 |
</para> |
5820 |
24 Oct 11 |
nicklas |
249 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
250 |
<listitem> |
5820 |
24 Oct 11 |
nicklas |
251 |
<para> |
5820 |
24 Oct 11 |
nicklas |
252 |
<emphasis>GZipped TAR archive</emphasis>: Collects the selected files/directories |
5820 |
24 Oct 11 |
nicklas |
253 |
into a TAR file and compress it with GZIP. |
5820 |
24 Oct 11 |
nicklas |
254 |
</para> |
5820 |
24 Oct 11 |
nicklas |
255 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
256 |
<listitem> |
5820 |
24 Oct 11 |
nicklas |
257 |
<para> |
5820 |
24 Oct 11 |
nicklas |
258 |
<emphasis>TAR archive</emphasis>: Collects the selected files/directories |
5820 |
24 Oct 11 |
nicklas |
259 |
into an uncompressed TAR file. |
5820 |
24 Oct 11 |
nicklas |
260 |
</para> |
5820 |
24 Oct 11 |
nicklas |
261 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
262 |
<listitem> |
5820 |
24 Oct 11 |
nicklas |
263 |
<para> |
5820 |
24 Oct 11 |
nicklas |
264 |
<emphasis>ZIP archive</emphasis>: Collects the selected files/directories |
5820 |
24 Oct 11 |
nicklas |
265 |
into a ZIP file. |
5820 |
24 Oct 11 |
nicklas |
266 |
</para> |
5820 |
24 Oct 11 |
nicklas |
267 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
268 |
</itemizedlist> |
5820 |
24 Oct 11 |
nicklas |
269 |
|
4043 |
06 Dec 07 |
jari |
270 |
<para> |
5820 |
24 Oct 11 |
nicklas |
271 |
See <xref linkend="plugin_developer.other.packer"/> for information |
5820 |
24 Oct 11 |
nicklas |
272 |
about implementing support for other file formats. |
4043 |
06 Dec 07 |
jari |
273 |
</para> |
5820 |
24 Oct 11 |
nicklas |
274 |
|
4043 |
06 Dec 07 |
jari |
275 |
</listitem> |
4043 |
06 Dec 07 |
jari |
276 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
277 |
|
4043 |
06 Dec 07 |
jari |
278 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
279 |
<term>Plate mapping exporter</term> |
4043 |
06 Dec 07 |
jari |
280 |
<listitem> |
4043 |
06 Dec 07 |
jari |
281 |
<para> |
4043 |
06 Dec 07 |
jari |
282 |
Exports plate mappings. |
4043 |
06 Dec 07 |
jari |
283 |
</para> |
4043 |
06 Dec 07 |
jari |
284 |
</listitem> |
4043 |
06 Dec 07 |
jari |
285 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
286 |
|
4043 |
06 Dec 07 |
jari |
287 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
288 |
<term>Plugin configuration exporter</term> |
4043 |
06 Dec 07 |
jari |
289 |
<listitem> |
4043 |
06 Dec 07 |
jari |
290 |
<para> |
4487 |
08 Sep 08 |
jari |
291 |
Exports plug-in configurations to an XML file. |
4043 |
06 Dec 07 |
jari |
292 |
</para> |
4043 |
06 Dec 07 |
jari |
293 |
</listitem> |
4043 |
06 Dec 07 |
jari |
294 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
295 |
|
4043 |
06 Dec 07 |
jari |
296 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
297 |
<term>Table exporter</term> |
4043 |
06 Dec 07 |
jari |
298 |
<listitem> |
4043 |
06 Dec 07 |
jari |
299 |
<para> |
5820 |
24 Oct 11 |
nicklas |
300 |
Exports data from table listings in the web-interface to |
5820 |
24 Oct 11 |
nicklas |
301 |
a TAB-separated text file or XML file. |
4043 |
06 Dec 07 |
jari |
302 |
</para> |
4043 |
06 Dec 07 |
jari |
303 |
</listitem> |
4043 |
06 Dec 07 |
jari |
304 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
305 |
|
4043 |
06 Dec 07 |
jari |
306 |
</variablelist> |
4043 |
06 Dec 07 |
jari |
307 |
|
4043 |
06 Dec 07 |
jari |
308 |
</sect1> |
4043 |
06 Dec 07 |
jari |
309 |
|
4043 |
06 Dec 07 |
jari |
310 |
<sect1 id="coreplugins.import"> |
4432 |
01 Sep 08 |
jari |
311 |
<title>Core import plug-ins</title> |
4043 |
06 Dec 07 |
jari |
312 |
|
4431 |
01 Sep 08 |
jari |
313 |
<para> |
5035 |
29 Jul 09 |
martin |
314 |
There are many import plug-ins in BASE. Their use are in most |
4431 |
01 Sep 08 |
jari |
315 |
cases seamless and the user does not need to be aware of |
4431 |
01 Sep 08 |
jari |
316 |
detailed plug-in usage. However, there is a set of batch import |
4431 |
01 Sep 08 |
jari |
317 |
plug-ins that are targeted for importing multiple items into |
4431 |
01 Sep 08 |
jari |
318 |
BASE. These batch importers require some user knowledge for |
4431 |
01 Sep 08 |
jari |
319 |
proper and efficient use of them. The batch plug-ins are listed |
4431 |
01 Sep 08 |
jari |
320 |
in the <xref linkend="coreplugins.import.batch" /> sub-section |
4431 |
01 Sep 08 |
jari |
321 |
below together with pointers to further reading on how to use |
4431 |
01 Sep 08 |
jari |
322 |
the plug-ins. |
4431 |
01 Sep 08 |
jari |
323 |
</para> |
4431 |
01 Sep 08 |
jari |
324 |
|
4043 |
06 Dec 07 |
jari |
325 |
<variablelist> |
4043 |
06 Dec 07 |
jari |
326 |
|
4043 |
06 Dec 07 |
jari |
327 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
328 |
<term>Affymetrix CDF probeset importer</term> |
4043 |
06 Dec 07 |
jari |
329 |
<listitem> |
4043 |
06 Dec 07 |
jari |
330 |
<para> |
4043 |
06 Dec 07 |
jari |
331 |
This plug-in is used to import probesets (reporters in |
4043 |
06 Dec 07 |
jari |
332 |
BASE language) from an Affymetrix CDF file. It can be used |
4043 |
06 Dec 07 |
jari |
333 |
in import mode from the reporter list view and from the |
4043 |
06 Dec 07 |
jari |
334 |
array design view and in verification mode from the array |
4487 |
08 Sep 08 |
jari |
335 |
design view. The plug-in can only set the name and ID of |
4043 |
06 Dec 07 |
jari |
336 |
the reporters, since the CDF file doesn't contains any |
4043 |
06 Dec 07 |
jari |
337 |
annotation information. Probesets already in BASE will not |
5820 |
24 Oct 11 |
nicklas |
338 |
be affected by the import. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
339 |
</para> |
4043 |
06 Dec 07 |
jari |
340 |
</listitem> |
4043 |
06 Dec 07 |
jari |
341 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
342 |
|
4043 |
06 Dec 07 |
jari |
343 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
344 |
<term>Annotation importer</term> |
4043 |
06 Dec 07 |
jari |
345 |
<listitem> |
4043 |
06 Dec 07 |
jari |
346 |
<para> |
4487 |
08 Sep 08 |
jari |
347 |
Imports annotation to any annotatable item in BASE. |
5820 |
24 Oct 11 |
nicklas |
348 |
Configurations are supported but not required. |
4043 |
06 Dec 07 |
jari |
349 |
</para> |
5820 |
24 Oct 11 |
nicklas |
350 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
351 |
</varlistentry> |
5820 |
24 Oct 11 |
nicklas |
352 |
|
5820 |
24 Oct 11 |
nicklas |
353 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
354 |
<term>GTF reporter importer</term> |
5820 |
24 Oct 11 |
nicklas |
355 |
<listitem> |
4043 |
06 Dec 07 |
jari |
356 |
<para> |
5820 |
24 Oct 11 |
nicklas |
357 |
Imports reporter information from GTF (Gene transfer format) |
5820 |
24 Oct 11 |
nicklas |
358 |
files. Configurations are supported but not required. BASE |
5820 |
24 Oct 11 |
nicklas |
359 |
has pre-installed configurations that uses the gene_id or transcript_id |
5820 |
24 Oct 11 |
nicklas |
360 |
as reporter id. |
4043 |
06 Dec 07 |
jari |
361 |
</para> |
4043 |
06 Dec 07 |
jari |
362 |
</listitem> |
4043 |
06 Dec 07 |
jari |
363 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
364 |
|
4043 |
06 Dec 07 |
jari |
365 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
366 |
<term>GTF reporter map importer</term> |
4043 |
06 Dec 07 |
jari |
367 |
<listitem> |
4043 |
06 Dec 07 |
jari |
368 |
<para> |
5820 |
24 Oct 11 |
nicklas |
369 |
Imports array design features from GTF (Gene transfer format) |
5820 |
24 Oct 11 |
nicklas |
370 |
files. A configuration is needed. BASE has pre-installed |
5820 |
24 Oct 11 |
nicklas |
371 |
configurations that uses the gene_id or transcript_id |
5820 |
24 Oct 11 |
nicklas |
372 |
as reporter id. |
4043 |
06 Dec 07 |
jari |
373 |
</para> |
5820 |
24 Oct 11 |
nicklas |
374 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
375 |
</varlistentry> |
5820 |
24 Oct 11 |
nicklas |
376 |
|
5820 |
24 Oct 11 |
nicklas |
377 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
378 |
<term>Help texts importer</term> |
5820 |
24 Oct 11 |
nicklas |
379 |
<listitem> |
4043 |
06 Dec 07 |
jari |
380 |
<para> |
5820 |
24 Oct 11 |
nicklas |
381 |
Imports help texts from an XML file into BASE. |
5820 |
24 Oct 11 |
nicklas |
382 |
No configuration is needed. |
4043 |
06 Dec 07 |
jari |
383 |
</para> |
4043 |
06 Dec 07 |
jari |
384 |
</listitem> |
4043 |
06 Dec 07 |
jari |
385 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
386 |
|
4043 |
06 Dec 07 |
jari |
387 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
388 |
<term>Illumina raw data importer</term> |
4043 |
06 Dec 07 |
jari |
389 |
<listitem> |
4043 |
06 Dec 07 |
jari |
390 |
<para> |
5820 |
24 Oct 11 |
nicklas |
391 |
This plug-in is used to import raw data from Illumina BeadStudion |
5820 |
24 Oct 11 |
nicklas |
392 |
data files. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
393 |
</para> |
4043 |
06 Dec 07 |
jari |
394 |
</listitem> |
4043 |
06 Dec 07 |
jari |
395 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
396 |
|
4043 |
06 Dec 07 |
jari |
397 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
398 |
<term>Plate importer</term> |
4043 |
06 Dec 07 |
jari |
399 |
<listitem> |
4043 |
06 Dec 07 |
jari |
400 |
<para> |
5820 |
24 Oct 11 |
nicklas |
401 |
Imports plates from a simple flat file. A configuration is needed. |
5820 |
24 Oct 11 |
nicklas |
402 |
BASE has pre-installed configurations for 96- and 384-well plates. |
4043 |
06 Dec 07 |
jari |
403 |
</para> |
4043 |
06 Dec 07 |
jari |
404 |
</listitem> |
4043 |
06 Dec 07 |
jari |
405 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
406 |
|
4043 |
06 Dec 07 |
jari |
407 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
408 |
<term>Plate mapping importer</term> |
4043 |
06 Dec 07 |
jari |
409 |
<listitem> |
4043 |
06 Dec 07 |
jari |
410 |
<para> |
5820 |
24 Oct 11 |
nicklas |
411 |
Imports plate mappings exported by the <emphasis>Plate mapping exporter</emphasis>. |
5820 |
24 Oct 11 |
nicklas |
412 |
No configuration is needed. |
4043 |
06 Dec 07 |
jari |
413 |
</para> |
4043 |
06 Dec 07 |
jari |
414 |
</listitem> |
4043 |
06 Dec 07 |
jari |
415 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
416 |
|
4043 |
06 Dec 07 |
jari |
417 |
|
4043 |
06 Dec 07 |
jari |
418 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
419 |
<term>Plugin configuration importer</term> |
4043 |
06 Dec 07 |
jari |
420 |
<listitem> |
4043 |
06 Dec 07 |
jari |
421 |
<para> |
5820 |
24 Oct 11 |
nicklas |
422 |
Imports plug-in configurations from an XML file. No configuration |
5820 |
24 Oct 11 |
nicklas |
423 |
is needed. |
4043 |
06 Dec 07 |
jari |
424 |
</para> |
4043 |
06 Dec 07 |
jari |
425 |
</listitem> |
4043 |
06 Dec 07 |
jari |
426 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
427 |
|
4043 |
06 Dec 07 |
jari |
428 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
429 |
<term>Print map importer</term> |
4043 |
06 Dec 07 |
jari |
430 |
<listitem> |
4043 |
06 Dec 07 |
jari |
431 |
<para> |
5820 |
24 Oct 11 |
nicklas |
432 |
Imports array design features from TAM or MwBR files. This plug-in |
5820 |
24 Oct 11 |
nicklas |
433 |
require that the array design is connected with plates. No |
5820 |
24 Oct 11 |
nicklas |
434 |
configuration is needed. |
4043 |
06 Dec 07 |
jari |
435 |
</para> |
4043 |
06 Dec 07 |
jari |
436 |
</listitem> |
4043 |
06 Dec 07 |
jari |
437 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
438 |
|
4043 |
06 Dec 07 |
jari |
439 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
440 |
<term>Raw data importer</term> |
4043 |
06 Dec 07 |
jari |
441 |
<listitem> |
4043 |
06 Dec 07 |
jari |
442 |
<para> |
5820 |
24 Oct 11 |
nicklas |
443 |
Imports raw data from a text file. A configuration is needed. |
5820 |
24 Oct 11 |
nicklas |
444 |
BASE has pre-installed configurations for GenePix and Cufflinks |
5820 |
24 Oct 11 |
nicklas |
445 |
data files. |
4043 |
06 Dec 07 |
jari |
446 |
</para> |
4043 |
06 Dec 07 |
jari |
447 |
</listitem> |
4043 |
06 Dec 07 |
jari |
448 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
449 |
|
4043 |
06 Dec 07 |
jari |
450 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
451 |
<term>Reporter importer</term> |
4043 |
06 Dec 07 |
jari |
452 |
<listitem> |
4043 |
06 Dec 07 |
jari |
453 |
<para> |
5820 |
24 Oct 11 |
nicklas |
454 |
Import reporter (probeset) information from a file. A configuration |
5820 |
24 Oct 11 |
nicklas |
455 |
is not needed, but is recommended. BASE has pre-installed configurations |
5820 |
24 Oct 11 |
nicklas |
456 |
for several different file types. |
4043 |
06 Dec 07 |
jari |
457 |
</para> |
4043 |
06 Dec 07 |
jari |
458 |
<para> |
4043 |
06 Dec 07 |
jari |
459 |
<emphasis>Since BASE 2.0, available |
4043 |
06 Dec 07 |
jari |
460 |
configurations:</emphasis> |
4043 |
06 Dec 07 |
jari |
461 |
</para> |
4043 |
06 Dec 07 |
jari |
462 |
</listitem> |
4043 |
06 Dec 07 |
jari |
463 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
464 |
|
4043 |
06 Dec 07 |
jari |
465 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
466 |
<term>Reporter map importer</term> |
4043 |
06 Dec 07 |
jari |
467 |
<listitem> |
4043 |
06 Dec 07 |
jari |
468 |
<para> |
5820 |
24 Oct 11 |
nicklas |
469 |
Imports array design features from text files. This plug-in can |
5820 |
24 Oct 11 |
nicklas |
470 |
be used without connection to plates. A configuration is needed. |
5820 |
24 Oct 11 |
nicklas |
471 |
BASE has pre-installed configurations for some file formats. |
4043 |
06 Dec 07 |
jari |
472 |
</para> |
4043 |
06 Dec 07 |
jari |
473 |
</listitem> |
4043 |
06 Dec 07 |
jari |
474 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
475 |
|
4043 |
06 Dec 07 |
jari |
476 |
</variablelist> |
4043 |
06 Dec 07 |
jari |
477 |
|
4431 |
01 Sep 08 |
jari |
478 |
<sect2 id="coreplugins.import.batch"> |
4432 |
01 Sep 08 |
jari |
479 |
<title>Core batch import plug-ins</title> |
4431 |
01 Sep 08 |
jari |
480 |
|
4431 |
01 Sep 08 |
jari |
481 |
<para> |
4431 |
01 Sep 08 |
jari |
482 |
The batch import plug-ins all work similarly and their usage |
5820 |
24 Oct 11 |
nicklas |
483 |
is described in <xref linkend="import_data.batch" />. All |
5820 |
24 Oct 11 |
nicklas |
484 |
batch importers have support for configurations but can also |
5820 |
24 Oct 11 |
nicklas |
485 |
be used without. |
4431 |
01 Sep 08 |
jari |
486 |
</para> |
4431 |
01 Sep 08 |
jari |
487 |
|
4431 |
01 Sep 08 |
jari |
488 |
<variablelist> |
4434 |
02 Sep 08 |
nicklas |
489 |
<varlistentry> |
4434 |
02 Sep 08 |
nicklas |
490 |
<term>Array batch importer</term> |
4434 |
02 Sep 08 |
nicklas |
491 |
<listitem> |
4434 |
02 Sep 08 |
nicklas |
492 |
<para> |
4434 |
02 Sep 08 |
nicklas |
493 |
Imports and updates array batches in a batch. |
4434 |
02 Sep 08 |
nicklas |
494 |
</para> |
4434 |
02 Sep 08 |
nicklas |
495 |
</listitem> |
4434 |
02 Sep 08 |
nicklas |
496 |
</varlistentry> |
4434 |
02 Sep 08 |
nicklas |
497 |
|
4434 |
02 Sep 08 |
nicklas |
498 |
<varlistentry> |
4434 |
02 Sep 08 |
nicklas |
499 |
<term>Array design importer</term> |
4434 |
02 Sep 08 |
nicklas |
500 |
<listitem> |
4434 |
02 Sep 08 |
nicklas |
501 |
<para> |
4434 |
02 Sep 08 |
nicklas |
502 |
Imports and updates array designs in a batch. |
4434 |
02 Sep 08 |
nicklas |
503 |
</para> |
4434 |
02 Sep 08 |
nicklas |
504 |
</listitem> |
4434 |
02 Sep 08 |
nicklas |
505 |
</varlistentry> |
4434 |
02 Sep 08 |
nicklas |
506 |
|
4434 |
02 Sep 08 |
nicklas |
507 |
<varlistentry> |
4434 |
02 Sep 08 |
nicklas |
508 |
<term>Array slide importer</term> |
4434 |
02 Sep 08 |
nicklas |
509 |
<listitem> |
4434 |
02 Sep 08 |
nicklas |
510 |
<para> |
4434 |
02 Sep 08 |
nicklas |
511 |
Imports and updates array slides in a batch. |
4434 |
02 Sep 08 |
nicklas |
512 |
</para> |
5820 |
24 Oct 11 |
nicklas |
513 |
</listitem> |
5820 |
24 Oct 11 |
nicklas |
514 |
</varlistentry> |
5820 |
24 Oct 11 |
nicklas |
515 |
|
5820 |
24 Oct 11 |
nicklas |
516 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
517 |
<term>Bioplate importer</term> |
5820 |
24 Oct 11 |
nicklas |
518 |
<listitem> |
4434 |
02 Sep 08 |
nicklas |
519 |
<para> |
5820 |
24 Oct 11 |
nicklas |
520 |
Imports and updates bioplates in a batch. Note that this |
5820 |
24 Oct 11 |
nicklas |
521 |
import can't be used to put biomaterial on the bioplates. |
4434 |
02 Sep 08 |
nicklas |
522 |
</para> |
4434 |
02 Sep 08 |
nicklas |
523 |
</listitem> |
4434 |
02 Sep 08 |
nicklas |
524 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
525 |
|
4431 |
01 Sep 08 |
jari |
526 |
<varlistentry> |
4431 |
01 Sep 08 |
jari |
527 |
<term>Biosource importer</term> |
4431 |
01 Sep 08 |
jari |
528 |
<listitem> |
4431 |
01 Sep 08 |
jari |
529 |
<para> |
4431 |
01 Sep 08 |
jari |
530 |
Imports and updates biosources in a batch. |
4431 |
01 Sep 08 |
jari |
531 |
</para> |
4431 |
01 Sep 08 |
jari |
532 |
</listitem> |
4431 |
01 Sep 08 |
jari |
533 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
534 |
|
4431 |
01 Sep 08 |
jari |
535 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
536 |
<term>Derived bioassay importer</term> |
4431 |
01 Sep 08 |
jari |
537 |
<listitem> |
4431 |
01 Sep 08 |
jari |
538 |
<para> |
5820 |
24 Oct 11 |
nicklas |
539 |
Imports and updates derived bioassays in a batch. |
4431 |
01 Sep 08 |
jari |
540 |
</para> |
4431 |
01 Sep 08 |
jari |
541 |
</listitem> |
4431 |
01 Sep 08 |
jari |
542 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
543 |
|
4431 |
01 Sep 08 |
jari |
544 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
545 |
<term>Extract importer</term> |
4431 |
01 Sep 08 |
jari |
546 |
<listitem> |
4431 |
01 Sep 08 |
jari |
547 |
<para> |
5820 |
24 Oct 11 |
nicklas |
548 |
Imports and updates extracts in a batch. |
4431 |
01 Sep 08 |
jari |
549 |
</para> |
4431 |
01 Sep 08 |
jari |
550 |
</listitem> |
4431 |
01 Sep 08 |
jari |
551 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
552 |
|
4431 |
01 Sep 08 |
jari |
553 |
<varlistentry> |
5820 |
24 Oct 11 |
nicklas |
554 |
<term>Physical bioassay importer</term> |
4431 |
01 Sep 08 |
jari |
555 |
<listitem> |
4431 |
01 Sep 08 |
jari |
556 |
<para> |
5820 |
24 Oct 11 |
nicklas |
557 |
Imports and updates physical bioassays in a batch. |
4431 |
01 Sep 08 |
jari |
558 |
</para> |
4431 |
01 Sep 08 |
jari |
559 |
</listitem> |
4431 |
01 Sep 08 |
jari |
560 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
561 |
|
4431 |
01 Sep 08 |
jari |
562 |
<varlistentry> |
4431 |
01 Sep 08 |
jari |
563 |
<term>Raw bioassay importer</term> |
4431 |
01 Sep 08 |
jari |
564 |
<listitem> |
4431 |
01 Sep 08 |
jari |
565 |
<para> |
4431 |
01 Sep 08 |
jari |
566 |
Imports and updates raw bioassays in a batch. |
4431 |
01 Sep 08 |
jari |
567 |
</para> |
4431 |
01 Sep 08 |
jari |
568 |
</listitem> |
4431 |
01 Sep 08 |
jari |
569 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
570 |
|
4431 |
01 Sep 08 |
jari |
571 |
<varlistentry> |
4431 |
01 Sep 08 |
jari |
572 |
<term>Sample importer</term> |
4431 |
01 Sep 08 |
jari |
573 |
<listitem> |
4431 |
01 Sep 08 |
jari |
574 |
<para> |
4431 |
01 Sep 08 |
jari |
575 |
Imports and updates samples in a batch. |
4431 |
01 Sep 08 |
jari |
576 |
</para> |
4431 |
01 Sep 08 |
jari |
577 |
</listitem> |
4431 |
01 Sep 08 |
jari |
578 |
</varlistentry> |
4431 |
01 Sep 08 |
jari |
579 |
|
4431 |
01 Sep 08 |
jari |
580 |
</variablelist> |
4431 |
01 Sep 08 |
jari |
581 |
|
4431 |
01 Sep 08 |
jari |
582 |
</sect2> |
4431 |
01 Sep 08 |
jari |
583 |
|
4043 |
06 Dec 07 |
jari |
584 |
</sect1> |
4043 |
06 Dec 07 |
jari |
585 |
|
4043 |
06 Dec 07 |
jari |
586 |
<sect1 id="coreplugins.intensity"> |
4432 |
01 Sep 08 |
jari |
587 |
<title>Core intensity plug-ins</title> |
4043 |
06 Dec 07 |
jari |
588 |
|
4043 |
06 Dec 07 |
jari |
589 |
<variablelist> |
4043 |
06 Dec 07 |
jari |
590 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
591 |
<term>Formula intensity calculator</term> |
4043 |
06 Dec 07 |
jari |
592 |
<listitem> |
4043 |
06 Dec 07 |
jari |
593 |
<para> |
5820 |
24 Oct 11 |
nicklas |
594 |
Calculate intensities from raw data using a user-defined formula. |
5820 |
24 Oct 11 |
nicklas |
595 |
No configuration is needed, but formulas must be defined using |
5820 |
24 Oct 11 |
nicklas |
596 |
<menuchoice> |
5820 |
24 Oct 11 |
nicklas |
597 |
<guimenu>View</guimenu> |
5820 |
24 Oct 11 |
nicklas |
598 |
<guimenuitem>Formulas</guimenuitem> |
5820 |
24 Oct 11 |
nicklas |
599 |
</menuchoice>. |
4043 |
06 Dec 07 |
jari |
600 |
</para> |
4043 |
06 Dec 07 |
jari |
601 |
</listitem> |
4043 |
06 Dec 07 |
jari |
602 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
603 |
|
4043 |
06 Dec 07 |
jari |
604 |
</variablelist> |
4043 |
06 Dec 07 |
jari |
605 |
|
4043 |
06 Dec 07 |
jari |
606 |
</sect1> |
4043 |
06 Dec 07 |
jari |
607 |
|
4043 |
06 Dec 07 |
jari |
608 |
<sect1 id="coreplugins.other"> |
4432 |
01 Sep 08 |
jari |
609 |
<title>Uncategorized core plug-ins</title> |
4043 |
06 Dec 07 |
jari |
610 |
|
4043 |
06 Dec 07 |
jari |
611 |
<variablelist> |
4043 |
06 Dec 07 |
jari |
612 |
|
4043 |
06 Dec 07 |
jari |
613 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
614 |
<term>TAR file unpacker</term> |
4043 |
06 Dec 07 |
jari |
615 |
<listitem> |
4043 |
06 Dec 07 |
jari |
616 |
<para> |
4043 |
06 Dec 07 |
jari |
617 |
Unpacks a tar file on the BASE file system. It also |
4043 |
06 Dec 07 |
jari |
618 |
supports TAR files compressed with GZIP or BZIP |
5820 |
24 Oct 11 |
nicklas |
619 |
algorithms. This plug-in can be used to automatically |
5820 |
24 Oct 11 |
nicklas |
620 |
unpack files during upload. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
621 |
</para> |
4043 |
06 Dec 07 |
jari |
622 |
</listitem> |
4043 |
06 Dec 07 |
jari |
623 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
624 |
|
4043 |
06 Dec 07 |
jari |
625 |
<varlistentry> |
4043 |
06 Dec 07 |
jari |
626 |
<term>ZIP file unpacker</term> |
4043 |
06 Dec 07 |
jari |
627 |
<listitem> |
4043 |
06 Dec 07 |
jari |
628 |
<para> |
5820 |
24 Oct 11 |
nicklas |
629 |
Unpacks ZIP and JAR files on the BASE's file system. |
5820 |
24 Oct 11 |
nicklas |
630 |
This plug-in can be used to automatically unpack files |
5820 |
24 Oct 11 |
nicklas |
631 |
during upload. No configuration is needed. |
4043 |
06 Dec 07 |
jari |
632 |
</para> |
4043 |
06 Dec 07 |
jari |
633 |
</listitem> |
4043 |
06 Dec 07 |
jari |
634 |
</varlistentry> |
4043 |
06 Dec 07 |
jari |
635 |
|
6049 |
18 Apr 12 |
nicklas |
636 |
<varlistentry> |
6049 |
18 Apr 12 |
nicklas |
637 |
<term>BZip2 file unpacker</term> |
6049 |
18 Apr 12 |
nicklas |
638 |
<listitem> |
6049 |
18 Apr 12 |
nicklas |
639 |
<para> |
6049 |
18 Apr 12 |
nicklas |
640 |
Unpacks BZip2 compressed files to the BASE file |
6049 |
18 Apr 12 |
nicklas |
641 |
system. This plug-in can be used to automatically unpack files |
6049 |
18 Apr 12 |
nicklas |
642 |
during upload. No configuration is needed. |
6049 |
18 Apr 12 |
nicklas |
643 |
</para> |
6049 |
18 Apr 12 |
nicklas |
644 |
</listitem> |
6049 |
18 Apr 12 |
nicklas |
645 |
</varlistentry> |
6049 |
18 Apr 12 |
nicklas |
646 |
|
6049 |
18 Apr 12 |
nicklas |
647 |
<varlistentry> |
6049 |
18 Apr 12 |
nicklas |
648 |
<term>GZip file unpacker</term> |
6049 |
18 Apr 12 |
nicklas |
649 |
<listitem> |
6049 |
18 Apr 12 |
nicklas |
650 |
<para> |
6049 |
18 Apr 12 |
nicklas |
651 |
Unpacks GZip compressed files to the BASE file |
6049 |
18 Apr 12 |
nicklas |
652 |
system. This plug-in can be used to automatically unpack files |
6049 |
18 Apr 12 |
nicklas |
653 |
during upload. No configuration is needed. |
6049 |
18 Apr 12 |
nicklas |
654 |
</para> |
6049 |
18 Apr 12 |
nicklas |
655 |
</listitem> |
6049 |
18 Apr 12 |
nicklas |
656 |
</varlistentry> |
6049 |
18 Apr 12 |
nicklas |
657 |
|
4043 |
06 Dec 07 |
jari |
658 |
</variablelist> |
4043 |
06 Dec 07 |
jari |
659 |
|
4043 |
06 Dec 07 |
jari |
660 |
</sect1> |
4043 |
06 Dec 07 |
jari |
661 |
|
3334 |
14 May 07 |
nicklas |
662 |
</appendix> |
3334 |
14 May 07 |
nicklas |
663 |
|