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05 Mar 07 |
nicklas |
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<?xml version="1.0" encoding="UTF-8"?> |
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05 Mar 07 |
martin |
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<!DOCTYPE part PUBLIC |
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05 Mar 07 |
martin |
3 |
"-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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13 Mar 07 |
martin |
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"../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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05 Mar 07 |
martin |
5 |
<!-- |
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13 Mar 07 |
martin |
$Id$ |
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05 Mar 07 |
nicklas |
7 |
|
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06 Apr 09 |
nicklas |
Copyright (C) 2007 Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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06 Apr 09 |
nicklas |
Copyright (C) 2008 Jari Häkkinen |
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25 Oct 11 |
jari |
Copyright (C) 2011 Jari Häkkinen, Nicklas Nordborg |
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05 Mar 07 |
martin |
11 |
|
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05 Mar 07 |
martin |
This file is part of BASE - BioArray Software Environment. |
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05 Mar 07 |
martin |
Available at http://base.thep.lu.se/ |
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05 Mar 07 |
martin |
14 |
|
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05 Mar 07 |
martin |
BASE is free software; you can redistribute it and/or |
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05 Mar 07 |
martin |
modify it under the terms of the GNU General Public License |
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05 Sep 08 |
jari |
as published by the Free Software Foundation; either version 3 |
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05 Mar 07 |
martin |
of the License, or (at your option) any later version. |
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05 Mar 07 |
martin |
19 |
|
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05 Mar 07 |
martin |
BASE is distributed in the hope that it will be useful, |
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05 Mar 07 |
martin |
but WITHOUT ANY WARRANTY; without even the implied warranty of |
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05 Mar 07 |
martin |
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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05 Mar 07 |
martin |
GNU General Public License for more details. |
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05 Mar 07 |
martin |
24 |
|
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05 Mar 07 |
martin |
You should have received a copy of the GNU General Public License |
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11 Sep 08 |
jari |
along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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05 Mar 07 |
martin |
27 |
--> |
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25 Oct 11 |
jari |
28 |
|
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06 Mar 07 |
martin |
29 |
<part id="overviewdoc"> |
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04 Oct 11 |
nicklas |
30 |
<?dbhtml filename="overview.html"?> |
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05 Mar 07 |
nicklas |
31 |
<title>Overview</title> |
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31 May 07 |
jari |
32 |
|
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25 Oct 11 |
jari |
33 |
<partintro id="overview_intro"> |
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31 May 07 |
jari |
34 |
<para> |
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25 Oct 11 |
jari |
35 |
BASE is a freely available software solution designed for |
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25 Oct 11 |
jari |
36 |
laboratories looking for a single point of storage for all |
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25 Oct 11 |
jari |
37 |
information related to their experimentation and for storing, |
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25 Oct 11 |
jari |
38 |
managing, and analysing genomics/transcriptomics data. BASE |
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25 Oct 11 |
jari |
39 |
offers a multi-user local data repository featuring a web |
5824 |
25 Oct 11 |
jari |
40 |
browser user interface, laboratory information management system |
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25 Oct 11 |
jari |
41 |
(LIMS) for biomaterials and array production, annotations such |
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25 Oct 11 |
jari |
42 |
as clinical information, hierarchical overview of analysis, and |
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25 Oct 11 |
jari |
43 |
integrates tools like <ulink |
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25 Oct 11 |
jari |
44 |
url='http://www.tm4.org/mev/'>MultiExperiment Viewer</ulink>. |
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31 May 07 |
jari |
45 |
</para> |
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25 Oct 11 |
jari |
46 |
|
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25 Oct 11 |
jari |
47 |
<para> |
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25 Oct 11 |
jari |
48 |
BASE is <ulink |
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25 Oct 11 |
jari |
49 |
url='http://www.gnu.org/licenses/gpl-3.0.html'>GPLv3 |
5824 |
25 Oct 11 |
jari |
50 |
licensed</ulink> and can be freely downloaded and installed by |
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25 Oct 11 |
jari |
51 |
anyone. Once installed and configured, the system comprise a |
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25 Oct 11 |
jari |
52 |
database layer and a web server coupled to layers of software |
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25 Oct 11 |
jari |
53 |
for managing and analysing data in the database. |
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25 Oct 11 |
jari |
54 |
</para> |
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31 May 07 |
jari |
55 |
</partintro> |
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31 May 07 |
jari |
56 |
|
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05 Mar 07 |
martin |
57 |
<include file="why_base.xml"/> |
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27 Aug 08 |
jari |
58 |
<include file="features.xml"/> |
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18 Apr 07 |
martin |
59 |
<include file="resources.xml"/> |
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31 May 07 |
jari |
60 |
</part> |