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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE sect1 PUBLIC |
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"-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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"../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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<!-- |
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$Id$ |
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|
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Copyright (C) 2007 Jari Häkkinen, Peter Johansson, Nicklas Nordborg |
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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|
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You should have received a copy of the GNU General Public License |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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--> |
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<sect1 id="experiments_analysis.analysis"> |
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<?dbhtml filename="analysis.html" ?> |
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<title>Analysing data within BASE</title> |
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<para>TODO</para> |
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<sect2 id="experiments_analysis.bioassaysets"> |
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<title>Transformations and bioassay sets</title> |
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<para>TODO</para> |
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|
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<sect3 id="experiments_analysis.rootbioassayset"> |
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<title>The root bioassay set</title> |
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<para>TODO</para> |
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</sect3> |
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<sect3 id="experiments_analysis.overviewplots"> |
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<title>Overview plots</title> |
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<para>TODO</para> |
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</sect3> |
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</sect2> |
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<sect2 id="experiments_analysis.filtering"> |
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<title>Filtering data</title> |
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<para>TODO</para> |
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|
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<sect3 id="experiments_analysis.formulas"> |
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<title>Formulas</title> |
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<para>TODO</para> |
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</sect3> |
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</sect2> |
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<sect2 id="experiments_analysis.normalization"> |
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<title>Normalizing data</title> |
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<para>TODO</para> |
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</sect2> |
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<sect2 id="experiments_analysis.plugins"> |
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<title>Other analysis plug-ins</title> |
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<para>TODO</para> |
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</sect2> |
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<sect2 id="experiments_analysis.plotter"> |
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<title>The plot tool</title> |
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<para>TODO</para> |
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<sect3 id="experiments_analysis.scatterplot"> |
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<title>Scatter plots</title> |
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<para>TODO</para> |
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</sect3> |
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<sect3 id="experiments_analysis.histogramplot"> |
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<title>Histogram plots</title> |
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<para>TODO</para> |
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</sect3> |
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|
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<sect3 id="experiments_analysis.filterplot"> |
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<title>Filtering plots</title> |
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<para>TODO</para> |
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</sect3> |
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|
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<sect3 id="experiments_analysis.saveplot"> |
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<title>Save plots</title> |
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<para>TODO</para> |
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</sect3> |
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</sect2> |
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<sect2 id="experiments_analysis.explorer"> |
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<title>Experiment explorer</title> |
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<para>TODO</para> |
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<sect3 id="experiments_analysis.explorer.reporterview"> |
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<title>Reporter view</title> |
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<para>TODO</para> |
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</sect3> |
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|
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<sect3 id="experiments_analysis.explorer.reportersearch"> |
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<title>Reporter search</title> |
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<para>TODO</para> |
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</sect3> |
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</sect2> |
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</sect1> |