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/* |
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$Id$ |
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3 |
|
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Copyright (C) 2006 Nicklas Nordborg, Dominic Oyeniran |
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16 Aug 07 |
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Copyright (C) 2007 Nicklas Nordborg |
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6 |
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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9 |
|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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14 |
|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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19 |
|
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You should have received a copy of the GNU General Public License |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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22 |
*/ |
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23 |
|
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24 |
import net.sf.basedb.core.*; |
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25 |
|
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import java.util.Date; |
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import java.util.Set; |
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|
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/** |
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Tests the implementation of annotation type category. |
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@author Dominic Oyeniran |
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@version 2.0 |
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33 |
|
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@see AnnotationTypeCategory |
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35 |
*/ |
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36 |
public class TestAnnotationTypeCategory |
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37 |
{ |
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38 |
|
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39 |
static boolean ok = true; |
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40 |
|
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41 |
public static void main(String[] args) |
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42 |
{ |
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43 |
TestUtil.checkArgs(args); |
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44 |
TestUtil.begin(); |
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45 |
ok = test_all(); |
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46 |
TestUtil.stop(); |
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47 |
} |
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48 |
|
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49 |
static boolean test_all() |
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50 |
{ |
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51 |
write("++Testing annotation type categories"); |
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52 |
write_header(); |
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// Standard tests: create, load, list annotation type categories |
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nicklas |
54 |
int id = test_create("Test Category 1", true); |
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int id2 = test_create("Test Category 2", false); |
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56 |
test_load(id); |
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57 |
|
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58 |
test_list(-1); |
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59 |
|
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// extra test: add categories to annotation type |
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int id_int = TestAnnotationType.test_create(null, Type.INT, 0, 10, null, Item.SAMPLE, 1, null, true); |
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test_add_categories(id_int, id, id2); |
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63 |
test_list_categories(id_int, 2); |
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64 |
|
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65 |
if (TestUtil.waitBeforeDelete()) TestUtil.waitForEnter(); |
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66 |
test_remove_categories(id_int, id, id2); |
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67 |
TestAnnotationType.test_delete(id_int); |
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68 |
|
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// Standard test: Delete |
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test_delete(id); |
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71 |
test_delete(id2); |
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72 |
write("++Testing annotation type categories "+(ok ? "OK" : "Failed")+"\n"); |
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73 |
return ok; |
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74 |
} |
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75 |
|
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static int test_create(String name, boolean setAll) |
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77 |
{ |
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78 |
if (!TestUtil.hasPermission(Permission.CREATE, Item.ANNOTATIONTYPECATEGORY)) return 0; |
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79 |
int id = 0; |
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DbControl dc = null; |
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81 |
try |
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{ |
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dc = TestUtil.getDbControl(); |
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AnnotationTypeCategory atgc = AnnotationTypeCategory.getNew(dc); |
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atgc.setName(name); |
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if (setAll) |
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{ |
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atgc.setDescription("Added at " + new Date()); |
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} |
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dc.saveItem(atgc); |
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dc.commit(); |
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dc=TestUtil.getDbControl(); |
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dc.reattachItem(atgc, false); |
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id=atgc.getId(); |
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write_item(id, atgc); |
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96 |
write("--Create annotation type category OK"); |
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97 |
} |
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98 |
catch (Throwable ex) |
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99 |
{ |
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100 |
write("--Create annotation type category FAILED"); |
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101 |
ex.printStackTrace(); |
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ok = false; |
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103 |
} |
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finally |
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{ |
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if (dc != null) dc.close(); |
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107 |
} |
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108 |
|
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109 |
return id; |
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110 |
} |
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111 |
|
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112 |
static void test_load(int id) |
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113 |
{ |
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114 |
if (id == 0) return; |
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115 |
DbControl dc = null; |
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116 |
try |
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{ |
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118 |
dc = TestUtil.getDbControl(); |
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AnnotationTypeCategory atgc = AnnotationTypeCategory.getById(dc, id); |
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120 |
write_item(0, atgc); |
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121 |
write("--Load annotation type category OK"); |
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122 |
} |
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123 |
catch (Throwable ex) |
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124 |
{ |
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125 |
write("--Load annotation type category FAILED"); |
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126 |
ex.printStackTrace(); |
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ok = false; |
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128 |
} |
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129 |
finally |
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{ |
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131 |
if (dc != null) dc.close(); |
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132 |
} |
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133 |
|
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134 |
} |
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135 |
|
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136 |
static void test_list(int expectedResults) |
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137 |
{ |
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DbControl dc = null; |
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139 |
try |
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140 |
{ |
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141 |
dc = TestUtil.getDbControl(); |
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ItemResultList<AnnotationTypeCategory> list = AnnotationTypeCategory.getQuery().list(dc); |
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for (int i = 0; i<list.size(); i++) |
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{ |
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write_item(i, list.get(i)); |
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146 |
} |
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147 |
if (expectedResults >= 0 && expectedResults != list.size()) |
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148 |
{ |
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149 |
throw new BaseException("Expected "+expectedResults+" results, not "+list.size()); |
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150 |
} |
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151 |
write("--List annotation types categories OK ("+list.size()+")"); |
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05 Sep 08 |
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152 |
} |
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153 |
catch (Throwable ex) |
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{ |
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155 |
write("--List annotation types categories FAILED"); |
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156 |
ex.printStackTrace(); |
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157 |
ok = false; |
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158 |
} |
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159 |
finally |
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{ |
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161 |
if (dc != null) dc.close(); |
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162 |
} |
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163 |
} |
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164 |
|
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static void test_delete(int id) |
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{ |
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167 |
if (id == 0) return; |
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05 Sep 08 |
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168 |
DbControl dc = null; |
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05 Sep 08 |
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169 |
try |
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05 Sep 08 |
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170 |
{ |
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171 |
dc = TestUtil.getDbControl(); |
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05 Sep 08 |
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AnnotationTypeCategory at = AnnotationTypeCategory.getById(dc, id); |
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dc.deleteItem(at); |
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10 May 10 |
nicklas |
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Set<ItemProxy> using = at.getUsingItems(); |
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10 May 10 |
nicklas |
175 |
if (using.size() > 0) |
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10 May 10 |
nicklas |
176 |
{ |
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10 May 10 |
nicklas |
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throw new BaseException(at + " is used by " + using); |
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10 May 10 |
nicklas |
178 |
} |
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05 Sep 08 |
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dc.commit(); |
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05 Sep 08 |
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180 |
write("--Delete annotation type category OK"); |
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05 Sep 08 |
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181 |
} |
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05 Sep 08 |
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182 |
catch (Throwable ex) |
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05 Sep 08 |
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183 |
{ |
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05 Sep 08 |
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184 |
write("--Delete annotation type category FAILED"); |
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05 Sep 08 |
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185 |
ex.printStackTrace(); |
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05 Sep 08 |
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ok = false; |
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05 Sep 08 |
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187 |
} |
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05 Sep 08 |
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188 |
finally |
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05 Sep 08 |
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189 |
{ |
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05 Sep 08 |
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190 |
if (dc != null) dc.close(); |
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05 Sep 08 |
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191 |
} |
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05 Sep 08 |
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192 |
} |
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05 Sep 08 |
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193 |
|
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05 Sep 08 |
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194 |
|
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195 |
static void write(String message) |
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05 Sep 08 |
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196 |
{ |
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05 Sep 08 |
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197 |
System.out.println(message); |
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05 Sep 08 |
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198 |
} |
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05 Sep 08 |
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199 |
|
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05 Sep 08 |
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200 |
static void write_header () |
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05 Sep 08 |
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201 |
{ |
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05 Sep 08 |
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202 |
if (!TestUtil.getSilent()) |
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05 Sep 08 |
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203 |
{ |
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05 Sep 08 |
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204 |
write(" \tID \tName \tDescription"); |
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05 Sep 08 |
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205 |
write("-- \t-- \t--------- \t-----------"); |
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05 Sep 08 |
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206 |
} |
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05 Sep 08 |
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207 |
} |
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05 Sep 08 |
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208 |
|
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05 Sep 08 |
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209 |
static void write_item(int i, AnnotationTypeCategory atgc) |
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05 Sep 08 |
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210 |
throws BaseException |
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05 Sep 08 |
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211 |
{ |
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05 Sep 08 |
jari |
212 |
if (!TestUtil.getSilent()) |
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05 Sep 08 |
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213 |
write(i+":\t"+atgc.getId()+"\t"+atgc.getName()+"\t"+atgc.getDescription()); |
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05 Sep 08 |
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214 |
} |
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05 Sep 08 |
jari |
215 |
|
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05 Sep 08 |
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216 |
|
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05 Sep 08 |
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217 |
static void test_add_categories(int annotationTypeId, int... categoryIds) |
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05 Sep 08 |
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218 |
{ |
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05 Sep 08 |
jari |
219 |
if (annotationTypeId == 0) return; |
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05 Sep 08 |
jari |
220 |
DbControl dc = null; |
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05 Sep 08 |
jari |
221 |
try |
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05 Sep 08 |
jari |
222 |
{ |
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05 Sep 08 |
jari |
223 |
dc = TestUtil.getDbControl(); |
4460 |
05 Sep 08 |
jari |
224 |
AnnotationType at = AnnotationType.getById(dc, annotationTypeId); |
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05 Sep 08 |
jari |
225 |
for (int categoryId : categoryIds) |
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05 Sep 08 |
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226 |
{ |
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05 Sep 08 |
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227 |
if (categoryId != 0) |
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05 Sep 08 |
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228 |
{ |
4460 |
05 Sep 08 |
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229 |
at.addCategory(AnnotationTypeCategory.getById(dc, categoryId)); |
4460 |
05 Sep 08 |
jari |
230 |
} |
4460 |
05 Sep 08 |
jari |
231 |
} |
4460 |
05 Sep 08 |
jari |
232 |
dc.commit(); |
4460 |
05 Sep 08 |
jari |
233 |
write("--Add categories to annotation type OK"); |
4460 |
05 Sep 08 |
jari |
234 |
|
4460 |
05 Sep 08 |
jari |
235 |
} |
4460 |
05 Sep 08 |
jari |
236 |
catch (Throwable ex) |
4460 |
05 Sep 08 |
jari |
237 |
{ |
4460 |
05 Sep 08 |
jari |
238 |
write("--Add categories to annotation type FAILED"); |
4460 |
05 Sep 08 |
jari |
239 |
ex.printStackTrace(); |
4460 |
05 Sep 08 |
jari |
240 |
ok = false; |
4460 |
05 Sep 08 |
jari |
241 |
} |
4460 |
05 Sep 08 |
jari |
242 |
finally |
4460 |
05 Sep 08 |
jari |
243 |
{ |
4460 |
05 Sep 08 |
jari |
244 |
if (dc != null) dc.close(); |
4460 |
05 Sep 08 |
jari |
245 |
} |
4460 |
05 Sep 08 |
jari |
246 |
} |
4460 |
05 Sep 08 |
jari |
247 |
|
4460 |
05 Sep 08 |
jari |
248 |
static void test_remove_categories(int annotationTypeId, int... categoryIds) |
4460 |
05 Sep 08 |
jari |
249 |
{ |
4460 |
05 Sep 08 |
jari |
250 |
if (annotationTypeId == 0) return; |
4460 |
05 Sep 08 |
jari |
251 |
DbControl dc = null; |
4460 |
05 Sep 08 |
jari |
252 |
try |
4460 |
05 Sep 08 |
jari |
253 |
{ |
4460 |
05 Sep 08 |
jari |
254 |
dc = TestUtil.getDbControl(); |
4460 |
05 Sep 08 |
jari |
255 |
AnnotationType at = AnnotationType.getById(dc, annotationTypeId); |
4460 |
05 Sep 08 |
jari |
256 |
for (int categoryId : categoryIds) |
4460 |
05 Sep 08 |
jari |
257 |
{ |
4460 |
05 Sep 08 |
jari |
258 |
if (categoryId != 0) |
4460 |
05 Sep 08 |
jari |
259 |
{ |
4460 |
05 Sep 08 |
jari |
260 |
at.removeCategory(AnnotationTypeCategory.getById(dc, categoryId)); |
4460 |
05 Sep 08 |
jari |
261 |
} |
4460 |
05 Sep 08 |
jari |
262 |
} |
4460 |
05 Sep 08 |
jari |
263 |
dc.commit(); |
4460 |
05 Sep 08 |
jari |
264 |
write("--Remove categories to annotation type OK"); |
4460 |
05 Sep 08 |
jari |
265 |
|
4460 |
05 Sep 08 |
jari |
266 |
} |
4460 |
05 Sep 08 |
jari |
267 |
catch (Throwable ex) |
4460 |
05 Sep 08 |
jari |
268 |
{ |
4460 |
05 Sep 08 |
jari |
269 |
write("--Remove categories to annotation type FAILED"); |
4460 |
05 Sep 08 |
jari |
270 |
ex.printStackTrace(); |
4460 |
05 Sep 08 |
jari |
271 |
ok = false; |
4460 |
05 Sep 08 |
jari |
272 |
} |
4460 |
05 Sep 08 |
jari |
273 |
finally |
4460 |
05 Sep 08 |
jari |
274 |
{ |
4460 |
05 Sep 08 |
jari |
275 |
if (dc != null) dc.close(); |
4460 |
05 Sep 08 |
jari |
276 |
} |
4460 |
05 Sep 08 |
jari |
277 |
} |
4460 |
05 Sep 08 |
jari |
278 |
|
4460 |
05 Sep 08 |
jari |
279 |
static void test_list_categories(int annotationTypeId, int expectedResults) |
4460 |
05 Sep 08 |
jari |
280 |
{ |
4460 |
05 Sep 08 |
jari |
281 |
if (annotationTypeId == 0) return; |
4460 |
05 Sep 08 |
jari |
282 |
DbControl dc = null; |
4460 |
05 Sep 08 |
jari |
283 |
try |
4460 |
05 Sep 08 |
jari |
284 |
{ |
4460 |
05 Sep 08 |
jari |
285 |
dc = TestUtil.getDbControl(); |
4460 |
05 Sep 08 |
jari |
286 |
AnnotationType at = AnnotationType.getById(dc, annotationTypeId); |
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05 Sep 08 |
jari |
287 |
ItemResultList<AnnotationTypeCategory> list = at.getCategories().list(dc); |
4460 |
05 Sep 08 |
jari |
288 |
for (int i = 0; i<list.size(); i++) |
4460 |
05 Sep 08 |
jari |
289 |
{ |
4460 |
05 Sep 08 |
jari |
290 |
write_item(i, list.get(i)); |
4460 |
05 Sep 08 |
jari |
291 |
} |
4460 |
05 Sep 08 |
jari |
292 |
if (expectedResults >= 0 && expectedResults != list.size()) |
4460 |
05 Sep 08 |
jari |
293 |
{ |
4460 |
05 Sep 08 |
jari |
294 |
throw new BaseException("Expected "+expectedResults+" results, not "+list.size()); |
4460 |
05 Sep 08 |
jari |
295 |
} |
4460 |
05 Sep 08 |
jari |
296 |
write("--List categories for annotation type OK ("+list.size()+")"); |
4460 |
05 Sep 08 |
jari |
297 |
} |
4460 |
05 Sep 08 |
jari |
298 |
catch (Throwable ex) |
4460 |
05 Sep 08 |
jari |
299 |
{ |
4460 |
05 Sep 08 |
jari |
300 |
write("--List categories for annotation type FAILED"); |
4460 |
05 Sep 08 |
jari |
301 |
ex.printStackTrace(); |
4460 |
05 Sep 08 |
jari |
302 |
ok = false; |
4460 |
05 Sep 08 |
jari |
303 |
} |
4460 |
05 Sep 08 |
jari |
304 |
finally |
4460 |
05 Sep 08 |
jari |
305 |
{ |
4460 |
05 Sep 08 |
jari |
306 |
if (dc != null) dc.close(); |
4460 |
05 Sep 08 |
jari |
307 |
} |
4460 |
05 Sep 08 |
jari |
308 |
} |
4460 |
05 Sep 08 |
jari |
309 |
|
4460 |
05 Sep 08 |
jari |
310 |
} |
4460 |
05 Sep 08 |
jari |
311 |
|