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<%-- $Id$ |
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------------------------------------------------------------------ |
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Copyright (C) 2006 Nicklas Nordborg, Dominic Oyeniran |
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16 Aug 07 |
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Copyright (C) 2007 Martin Svensson |
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|
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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|
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You should have received a copy of the GNU General Public License |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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------------------------------------------------------------------ |
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|
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@author Dominic |
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@version 2.0 |
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--%> |
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<%@ page pageEncoding="UTF-8" session="false" |
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import="net.sf.basedb.core.SessionControl" |
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import="net.sf.basedb.core.DbControl" |
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import="net.sf.basedb.core.Group" |
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import="net.sf.basedb.core.Include" |
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import="net.sf.basedb.core.Item" |
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import="net.sf.basedb.core.ItemContext" |
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import="net.sf.basedb.core.ItemQuery" |
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import="net.sf.basedb.core.ItemResultList" |
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import="net.sf.basedb.core.AnnotationTypeCategory" |
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import="net.sf.basedb.core.AnnotationType" |
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import="net.sf.basedb.core.query.Orders" |
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import="net.sf.basedb.core.query.Hql" |
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import="net.sf.basedb.core.MultiPermissions" |
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import="net.sf.basedb.core.Permission" |
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import="net.sf.basedb.core.PermissionDeniedException" |
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import="net.sf.basedb.core.PluginDefinition" |
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import="net.sf.basedb.core.plugin.GuiContext" |
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import="net.sf.basedb.core.plugin.Plugin" |
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import="net.sf.basedb.core.Project" |
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import="net.sf.basedb.core.User" |
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import="net.sf.basedb.clients.web.Base" |
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import="net.sf.basedb.clients.web.PermissionUtil" |
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import="net.sf.basedb.clients.web.util.HTML" |
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import="net.sf.basedb.util.Values" |
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import="net.sf.basedb.util.formatter.Formatter" |
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import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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import="net.sf.basedb.clients.web.extensions.JspContext" |
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import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ButtonAction" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil" |
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import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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import="java.util.Date" |
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import="java.util.Collections" |
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import="java.util.Map" |
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import="java.util.Set" |
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%> |
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<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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<%! |
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private static final Item itemType = Item.ANNOTATIONTYPECATEGORY; |
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private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM); |
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%> |
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<% |
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final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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final String ID = sc.getId(); |
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final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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final int itemId = cc.getId(); |
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final String tab = Values.getStringOrNull(request.getParameter("tab")); |
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final float scale = Base.getScale(sc); |
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final DbControl dc = sc.newDbControl(":View "+itemType); |
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try |
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{ |
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Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc); |
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Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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|
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String title = null; |
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AnnotationTypeCategory annotationTypeCategory = AnnotationTypeCategory.getById(dc, itemId); |
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|
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final boolean writePermission = annotationTypeCategory.hasPermission(Permission.WRITE); |
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final boolean deletePermission = annotationTypeCategory.hasPermission(Permission.DELETE); |
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final boolean sharePermission = annotationTypeCategory.hasPermission(Permission.SET_PERMISSION); |
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final boolean setOwnerPermission = annotationTypeCategory.hasPermission(Permission.SET_OWNER); |
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final boolean isOwner = annotationTypeCategory.isOwner(); |
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final boolean isRemoved = annotationTypeCategory.isRemoved(); |
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final boolean isUsed = isRemoved && annotationTypeCategory.isUsed(); |
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final boolean deletePermanentlyPermission = deletePermission && !isUsed; |
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JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, annotationTypeCategory); |
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ExtensionsInvoker<ButtonAction> invoker = ToolbarUtil.useExtensions(jspContext); |
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%> |
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<base:page title="<%=title%>" id="view-page"> |
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<base:head scripts="tabcontrol-2.js,~categories.js" styles="toolbar.css,table.css,headertabcontrol.css,path.css"> |
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<ext:scripts context="<%=jspContext%>" /> |
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<ext:stylesheets context="<%=jspContext%>" /> |
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</base:head> |
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<base:body> |
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<p:path><p:pathelement |
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title="Annotation type categories" href="<%="index.jsp?ID="+ID%>" |
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/><p:pathelement title="<%=HTML.encodeTags(annotationTypeCategory.getName())%>" |
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/></p:path> |
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<div id="page-data" data-item-id="<%=itemId%>"></div> |
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|
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<t:tabcontrol |
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id="main" |
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subclass="content mastertabcontrol" |
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active="<%=tab%>"> |
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<t:tab id="properties" title="Properties"> |
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<div> |
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<table class="fullform bottomborder"> |
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<tr> |
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<th class="itemstatus"> |
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<base:icon |
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image="shared.png" |
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visible="<%=annotationTypeCategory.isShared()%>" |
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tooltip="This item is shared to other users, groups and/or projects" |
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/> |
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<base:icon |
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id="btnDeletePermanently" |
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image="deleted.png" |
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tooltip="This item has been flagged for deletion. Click to delete it now." |
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enabled="<%=deletePermanentlyPermission %>" |
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01 Feb 12 |
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visible="<%=isRemoved%>" |
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/> |
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<base:icon |
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id="btnUsingItems" |
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image="used.png" |
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tooltip="This item is used by other items and can't be permanently deleted. Show the items that are using this one" |
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01 Feb 12 |
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visible="<%=isRemoved && isUsed%>" /> |
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01 Feb 12 |
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</th> |
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01 Feb 12 |
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<td style="padding: 0px;"> |
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<tbl:toolbar subclass="bottomborder bg-filled-50"> |
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01 Feb 12 |
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<tbl:button |
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id="btnEdit" |
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disabled="<%=!writePermission%>" |
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02 Feb 12 |
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image="edit.png" |
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01 Feb 12 |
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title="Edit…" |
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tooltip="<%=writePermission ? "Edit this category" : "You do not have permission to edit this category"%>" |
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/> |
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01 Feb 12 |
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<tbl:button |
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id="btnDelete" |
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01 Feb 12 |
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disabled="<%=!deletePermission%>" |
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03 Feb 12 |
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image="delete.png" |
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01 Feb 12 |
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title="Delete" |
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01 Feb 12 |
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visible="<%=!annotationTypeCategory.isRemoved()%>" |
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01 Feb 12 |
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tooltip="<%=deletePermission ? "Delete this category" : "You do not have permission to delete this category"%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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id="btnRestore" |
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01 Feb 12 |
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disabled="<%=!writePermission%>" |
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image="restore.png" |
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01 Feb 12 |
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title="Restore" |
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01 Feb 12 |
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visible="<%=annotationTypeCategory.isRemoved()%>" |
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01 Feb 12 |
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tooltip="<%=writePermission ? "Restore this category" : "You do not have permission to restore this category"%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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id="btnShare" |
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01 Feb 12 |
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disabled="<%=!sharePermission%>" |
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02 Feb 12 |
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image="share.png" |
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01 Feb 12 |
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title="Share…" |
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01 Feb 12 |
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tooltip="<%=sharePermission ? "Share this annotation type category to other user, groups and projects" : "You do not have permission to share this annotation type"%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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id="btnSetOwner" |
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01 Feb 12 |
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disabled="<%=!setOwnerPermission%>" |
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01 Feb 12 |
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image="take_ownership.png" |
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01 Feb 12 |
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title="Set owner…" |
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01 Feb 12 |
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tooltip="<%=setOwnerPermission ? "Change owner of this item" : "You do not have permission to change owner of this item"%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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id="btnImport" |
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03 Feb 12 |
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image="import.png" |
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data-plugin-type="IMPORT" |
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01 Feb 12 |
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title="Import…" |
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01 Feb 12 |
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tooltip="Import data" |
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01 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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05 Jun 13 |
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id="btnExport" |
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05 Jun 13 |
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image="export.png" |
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05 Jun 13 |
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data-plugin-type="EXPORT" |
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01 Feb 12 |
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title="Export…" |
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01 Feb 12 |
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tooltip="Export data" |
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01 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<tbl:button |
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05 Jun 13 |
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id="btnRunPlugin" |
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05 Jun 13 |
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image="runplugin.png" |
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05 Jun 13 |
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data-plugin-type="OTHER" |
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01 Feb 12 |
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title="Run plugin…" |
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01 Feb 12 |
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tooltip="Run a plugin" |
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01 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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<ext:render extensions="<%=invoker%>" context="<%=jspContext%>" |
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25 Feb 19 |
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wrapper="<%=new PrefixSuffixRenderer<ButtonAction>(jspContext, "<td>", "</td>") %>"/> |
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01 Feb 12 |
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<tbl:button |
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01 Feb 12 |
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image="help.png" |
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05 Jun 13 |
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subclass="auto-init" |
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05 Jun 13 |
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data-auto-init="help" |
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05 Jun 13 |
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data-help-id="annotationtypecategory.view.properties" |
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01 Feb 12 |
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title="Help…" |
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01 Feb 12 |
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tooltip="Get help about this page" |
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01 Feb 12 |
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/> |
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01 Feb 12 |
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</tbl:toolbar> |
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01 Feb 12 |
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</td> |
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01 Feb 12 |
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</tr> |
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<tr> |
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01 Feb 12 |
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<th>Name</th> |
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08 Jun 06 |
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<td><%=HTML.encodeTags(annotationTypeCategory.getName())%></td> |
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08 Jun 06 |
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</tr> |
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08 Jun 06 |
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219 |
<tr> |
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01 Feb 12 |
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<th>Registered</th> |
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10 Dec 08 |
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<td><%=dateFormatter.format(annotationTypeCategory.getEntryDate())%></td> |
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10 Dec 08 |
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</tr> |
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10 Dec 08 |
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<tr> |
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01 Feb 12 |
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<th>Owner</th> |
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01 Feb 12 |
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<td><base:propertyvalue item="<%=annotationTypeCategory%>" property="owner" /></td> |
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08 Jun 06 |
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</tr> |
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08 Jun 06 |
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<tr> |
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01 Feb 12 |
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<th>Permissions</th> |
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01 Feb 12 |
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<td><%=PermissionUtil.getFullPermissionNames(annotationTypeCategory)%></td> |
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08 Jun 06 |
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</tr> |
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01 Feb 12 |
nicklas |
231 |
<tr> |
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01 Feb 12 |
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<th>Description</th> |
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01 Feb 12 |
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<td><%=HTML.niceFormat(annotationTypeCategory.getDescription())%></td> |
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01 Feb 12 |
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</tr> |
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08 Jun 06 |
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</table> |
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01 Feb 12 |
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</div> |
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08 Jun 06 |
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|
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08 Jun 06 |
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<% |
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01 Feb 12 |
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239 |
ItemQuery<AnnotationType> annotationTypeQuery = annotationTypeCategory.getAnnotationTypes(null); |
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01 Feb 12 |
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240 |
annotationTypeQuery.include(Include.ALL); |
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01 Feb 12 |
nicklas |
241 |
annotationTypeQuery.order(Orders.asc(Hql.property("name"))); |
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01 Feb 12 |
nicklas |
242 |
ItemResultList<AnnotationType> annotationTypes = annotationTypeQuery.list(dc); |
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01 Feb 12 |
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243 |
%> |
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01 Feb 12 |
nicklas |
244 |
<base:section |
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01 Feb 12 |
nicklas |
245 |
id="annotationTypes" |
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01 Feb 12 |
nicklas |
246 |
title="<%="Annotation types (" + annotationTypes.size() + ")"%>" |
5941 |
01 Feb 12 |
nicklas |
247 |
context="<%=cc%>" |
5941 |
01 Feb 12 |
nicklas |
248 |
> |
2356 |
08 Jun 06 |
dominic |
249 |
<% |
5941 |
01 Feb 12 |
nicklas |
250 |
if (annotationTypes.size() == 0) |
5941 |
01 Feb 12 |
nicklas |
251 |
{ |
5941 |
01 Feb 12 |
nicklas |
252 |
%> |
5941 |
01 Feb 12 |
nicklas |
253 |
<div class="messagecontainer note"> |
5941 |
01 Feb 12 |
nicklas |
254 |
There are no annotation types in this category (or, you don't have permission to view them). |
5941 |
01 Feb 12 |
nicklas |
255 |
</div> |
5941 |
01 Feb 12 |
nicklas |
256 |
<% |
5941 |
01 Feb 12 |
nicklas |
257 |
} |
5941 |
01 Feb 12 |
nicklas |
258 |
else |
5941 |
01 Feb 12 |
nicklas |
259 |
{ |
5941 |
01 Feb 12 |
nicklas |
260 |
%> |
5042 |
11 Aug 09 |
martin |
261 |
<tbl:table |
5042 |
11 Aug 09 |
martin |
262 |
id="members" |
5042 |
11 Aug 09 |
martin |
263 |
columns="all" |
5042 |
11 Aug 09 |
martin |
264 |
> |
3547 |
03 Jul 07 |
martin |
265 |
<tbl:columndef |
3547 |
03 Jul 07 |
martin |
266 |
id="name" |
3547 |
03 Jul 07 |
martin |
267 |
title="Name" |
3547 |
03 Jul 07 |
martin |
268 |
/> |
3547 |
03 Jul 07 |
martin |
269 |
<tbl:columndef |
5042 |
11 Aug 09 |
martin |
270 |
id="valuetype" |
5042 |
11 Aug 09 |
martin |
271 |
title="Value Type" |
3547 |
03 Jul 07 |
martin |
272 |
/> |
5042 |
11 Aug 09 |
martin |
273 |
<tbl:columndef |
5042 |
11 Aug 09 |
martin |
274 |
id="description" |
5042 |
11 Aug 09 |
martin |
275 |
title="Description" |
5042 |
11 Aug 09 |
martin |
276 |
/> |
5042 |
11 Aug 09 |
martin |
277 |
<tbl:columndef |
5042 |
11 Aug 09 |
martin |
278 |
id="requiredForMiame" |
5042 |
11 Aug 09 |
martin |
279 |
title="Required For Miame" |
5042 |
11 Aug 09 |
martin |
280 |
/> |
3547 |
03 Jul 07 |
martin |
281 |
<tbl:data> |
5941 |
01 Feb 12 |
nicklas |
282 |
<tbl:headers> |
5941 |
01 Feb 12 |
nicklas |
283 |
<tbl:headerrow> |
5941 |
01 Feb 12 |
nicklas |
284 |
<tbl:columnheaders /> |
5941 |
01 Feb 12 |
nicklas |
285 |
</tbl:headerrow> |
5941 |
01 Feb 12 |
nicklas |
286 |
</tbl:headers> |
3547 |
03 Jul 07 |
martin |
287 |
<tbl:rows> |
3547 |
03 Jul 07 |
martin |
288 |
<% |
5042 |
11 Aug 09 |
martin |
289 |
for (AnnotationType annotationType : annotationTypes) |
3547 |
03 Jul 07 |
martin |
290 |
{ |
5042 |
11 Aug 09 |
martin |
291 |
%> |
3547 |
03 Jul 07 |
martin |
292 |
<tbl:row> |
3890 |
30 Oct 07 |
nicklas |
293 |
<tbl:cell column="name"><base:icon |
5946 |
03 Feb 12 |
nicklas |
294 |
image="deleted.png" |
5042 |
11 Aug 09 |
martin |
295 |
tooltip="This item has been scheduled for deletion" |
5042 |
11 Aug 09 |
martin |
296 |
visible="<%=annotationType.isRemoved()%>" |
5042 |
11 Aug 09 |
martin |
297 |
/><%=Base.getLinkedName(ID, annotationType, false, true)%></tbl:cell> |
5042 |
11 Aug 09 |
martin |
298 |
<tbl:cell column="valuetype"><%=annotationType.getValueType()%></tbl:cell> |
5042 |
11 Aug 09 |
martin |
299 |
<tbl:cell column="description"><%=HTML.encodeTags(annotationType.getDescription())%></tbl:cell> |
5042 |
11 Aug 09 |
martin |
300 |
<tbl:cell column="requiredForMiame"><%=annotationType.isRequiredForMiame() ? "yes" : "no"%></tbl:cell> |
3547 |
03 Jul 07 |
martin |
301 |
</tbl:row> |
3547 |
03 Jul 07 |
martin |
302 |
<% |
3547 |
03 Jul 07 |
martin |
303 |
} |
3547 |
03 Jul 07 |
martin |
304 |
%> |
3547 |
03 Jul 07 |
martin |
305 |
</tbl:rows> |
3547 |
03 Jul 07 |
martin |
306 |
</tbl:data> |
5941 |
01 Feb 12 |
nicklas |
307 |
</tbl:table> |
3547 |
03 Jul 07 |
martin |
308 |
<% |
5511 |
19 Nov 10 |
nicklas |
309 |
} |
5511 |
19 Nov 10 |
nicklas |
310 |
%> |
5941 |
01 Feb 12 |
nicklas |
311 |
</base:section> |
5511 |
19 Nov 10 |
nicklas |
312 |
<jsp:include page="../../common/anytoany/list_anytoany.jsp"> |
5511 |
19 Nov 10 |
nicklas |
313 |
<jsp:param name="ID" value="<%=ID%>" /> |
5511 |
19 Nov 10 |
nicklas |
314 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
5511 |
19 Nov 10 |
nicklas |
315 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
5511 |
19 Nov 10 |
nicklas |
316 |
<jsp:param name="title" value="Other items related to this category" /> |
5511 |
19 Nov 10 |
nicklas |
317 |
</jsp:include> |
5941 |
01 Feb 12 |
nicklas |
318 |
<jsp:include page="../../common/share/list_share.jsp"> |
5941 |
01 Feb 12 |
nicklas |
319 |
<jsp:param name="ID" value="<%=ID%>" /> |
5941 |
01 Feb 12 |
nicklas |
320 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
5941 |
01 Feb 12 |
nicklas |
321 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
5941 |
01 Feb 12 |
nicklas |
322 |
<jsp:param name="title" value="Shared to" /> |
5941 |
01 Feb 12 |
nicklas |
323 |
</jsp:include> |
5941 |
01 Feb 12 |
nicklas |
324 |
</t:tab> |
5941 |
01 Feb 12 |
nicklas |
325 |
</t:tabcontrol> |
2356 |
08 Jun 06 |
dominic |
326 |
|
2356 |
08 Jun 06 |
dominic |
327 |
</base:body> |
2356 |
08 Jun 06 |
dominic |
328 |
</base:page> |
2356 |
08 Jun 06 |
dominic |
329 |
<% |
2356 |
08 Jun 06 |
dominic |
330 |
} |
2356 |
08 Jun 06 |
dominic |
331 |
finally |
2356 |
08 Jun 06 |
dominic |
332 |
{ |
2356 |
08 Jun 06 |
dominic |
333 |
if (dc != null) dc.close(); |
2356 |
08 Jun 06 |
dominic |
334 |
} |
2356 |
08 Jun 06 |
dominic |
335 |
|
2356 |
08 Jun 06 |
dominic |
336 |
%> |