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<%-- $Id$ |
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------------------------------------------------------------------ |
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Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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|
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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05 Sep 08 |
jari |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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24 Jan 06 |
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GNU General Public License for more details. |
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|
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You should have received a copy of the GNU General Public License |
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11 Sep 08 |
jari |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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------------------------------------------------------------------ |
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|
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|
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@author Nicklas |
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@version 2.0 |
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--%> |
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<%@ page pageEncoding="UTF-8" session="false" |
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import="net.sf.basedb.core.SessionControl" |
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import="net.sf.basedb.core.DbControl" |
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import="net.sf.basedb.core.Item" |
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import="net.sf.basedb.core.ItemContext" |
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import="net.sf.basedb.core.SystemItems" |
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import="net.sf.basedb.core.Permission" |
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import="net.sf.basedb.core.Include" |
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import="net.sf.basedb.core.ArrayBatch" |
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import="net.sf.basedb.core.ArrayDesign" |
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import="net.sf.basedb.core.Protocol" |
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import="net.sf.basedb.core.ItemSubtype" |
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import="net.sf.basedb.core.Project" |
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import="net.sf.basedb.core.Hardware" |
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import="net.sf.basedb.core.ItemQuery" |
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import="net.sf.basedb.core.ItemResultList" |
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import="net.sf.basedb.core.PermissionDeniedException" |
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import="net.sf.basedb.core.BaseException" |
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import="net.sf.basedb.core.query.Orders" |
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import="net.sf.basedb.core.query.Hql" |
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24 Jan 06 |
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import="net.sf.basedb.clients.web.Base" |
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import="net.sf.basedb.clients.web.util.HTML" |
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import="net.sf.basedb.util.Values" |
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17 Nov 10 |
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import="net.sf.basedb.core.plugin.GuiContext" |
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import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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17 Nov 10 |
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import="net.sf.basedb.clients.web.extensions.JspContext" |
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import="net.sf.basedb.clients.web.extensions.edit.EditUtil" |
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import="net.sf.basedb.clients.web.extensions.tabcontrol.TabAction" |
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import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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import="java.util.List" |
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import="java.util.Set" |
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import="java.util.HashSet" |
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import="java.util.Date" |
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%> |
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<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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<% |
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final Item itemType = Item.ARRAYBATCH; |
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final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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final int itemId = cc.getId(); |
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final String ID = sc.getId(); |
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final float scale = Base.getScale(sc); |
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final DbControl dc = sc.newDbControl(":Edit "+itemType); |
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try |
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{ |
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String title = null; |
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ArrayBatch batch = null; |
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|
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boolean readCurrentArrayDesign = true; |
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ArrayDesign currentArrayDesign = null; |
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List<ArrayDesign> defaultArrayDesigns = null; |
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boolean readCurrentProtocol = true; |
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Protocol currentProtocol = null; |
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List<Protocol> defaultProtocols = null; |
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boolean readCurrentPrintRobot = true; |
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Hardware currentPrintRobot = null; |
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List<Hardware> defaultPrintRobots = null; |
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|
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// Load recently used items |
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List<ArrayDesign> recentArrayDesigns = cc.getRecent(dc, Item.ARRAYDESIGN); |
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26 Feb 19 |
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List<Protocol> recentProtocols = cc.getRecent(dc, Item.PROTOCOL); |
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26 Feb 19 |
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List<Hardware> recentPrintRobots = cc.getRecent(dc, Item.HARDWARE); |
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28 Aug 06 |
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|
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24 Nov 06 |
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int activeProjectId = sc.getActiveProjectId(); |
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24 Nov 06 |
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if (activeProjectId > 0) |
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24 Nov 06 |
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{ |
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24 Nov 06 |
martin |
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Project activeProject = Project.getById(dc, activeProjectId); |
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24 Nov 06 |
martin |
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try |
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{ |
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26 Feb 19 |
nicklas |
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defaultArrayDesigns = activeProject.findDefaultItems(dc, Item.ARRAYDESIGN, true); |
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24 Nov 06 |
martin |
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} |
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24 Nov 06 |
martin |
99 |
catch (PermissionDeniedException pdex) |
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09 Aug 11 |
nicklas |
100 |
{} |
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24 Nov 06 |
martin |
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try |
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24 Nov 06 |
martin |
102 |
{ |
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26 Feb 19 |
nicklas |
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defaultProtocols = activeProject.findDefaultItems(dc, |
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01 Jun 11 |
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ItemSubtype.getById(dc, SystemItems.getId(Protocol.PRINTING)), false); |
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24 Nov 06 |
martin |
105 |
} |
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24 Nov 06 |
martin |
106 |
catch (PermissionDeniedException pdex) |
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09 Aug 11 |
nicklas |
107 |
{} |
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24 Nov 06 |
martin |
108 |
try |
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24 Nov 06 |
martin |
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{ |
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26 Feb 19 |
nicklas |
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defaultPrintRobots = activeProject.findDefaultItems(dc, |
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01 Jun 11 |
nicklas |
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ItemSubtype.getById(dc, SystemItems.getId(Hardware.PRINT_ROBOT)), false); |
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24 Nov 06 |
martin |
112 |
} |
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24 Nov 06 |
martin |
113 |
catch (PermissionDeniedException pdex) |
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09 Aug 11 |
nicklas |
114 |
{} |
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24 Nov 06 |
martin |
115 |
} |
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24 Jan 06 |
nicklas |
116 |
if (itemId == 0) |
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24 Jan 06 |
nicklas |
117 |
{ |
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24 Jan 06 |
nicklas |
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title = "Create array batch"; |
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24 Jan 06 |
nicklas |
119 |
cc.removeObject("item"); |
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29 Jun 06 |
nicklas |
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int arrayDesignId = Values.getInt(request.getParameter("arraydesign_id")); |
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29 Jun 06 |
nicklas |
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if (arrayDesignId != 0) |
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24 Jan 06 |
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{ |
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29 Jun 06 |
nicklas |
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currentArrayDesign = ArrayDesign.getById(dc, arrayDesignId); |
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29 Jun 06 |
nicklas |
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} |
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29 Jun 06 |
nicklas |
125 |
else if (cc.getPropertyFilter("arrayDesign.name") != null) |
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29 Jun 06 |
nicklas |
126 |
{ |
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24 Jan 06 |
nicklas |
127 |
currentArrayDesign = Base.getFirstMatching(dc, ArrayDesign.getQuery(), "name", cc.getPropertyFilter("arrayDesign.name")); |
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24 Jan 06 |
nicklas |
128 |
} |
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24 Jan 06 |
nicklas |
129 |
if (cc.getPropertyFilter("printRobot.name") != null) |
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24 Jan 06 |
nicklas |
130 |
{ |
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24 Jan 06 |
nicklas |
131 |
currentPrintRobot = Base.getFirstMatching(dc, Hardware.getQuery(), "name", cc.getPropertyFilter("printRobot.name")); |
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24 Jan 06 |
nicklas |
132 |
} |
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24 Jan 06 |
nicklas |
133 |
if (cc.getPropertyFilter("protocol.name") != null) |
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24 Jan 06 |
nicklas |
134 |
{ |
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24 Jan 06 |
nicklas |
135 |
currentProtocol = Base.getFirstMatching(dc, Protocol.getQuery(), "name", cc.getPropertyFilter("protocol.name")); |
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24 Jan 06 |
nicklas |
136 |
} |
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24 Jan 06 |
nicklas |
137 |
} |
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24 Jan 06 |
nicklas |
138 |
else |
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24 Jan 06 |
nicklas |
139 |
{ |
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24 Jan 06 |
nicklas |
140 |
batch = ArrayBatch.getById(dc, itemId); |
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28 Aug 13 |
nicklas |
141 |
batch.checkPermission(Permission.WRITE); |
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24 Jan 06 |
nicklas |
142 |
cc.setObject("item", batch); |
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24 Jan 06 |
nicklas |
143 |
title = "Edit array batch -- " + HTML.encodeTags(batch.getName()); |
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24 Jan 06 |
nicklas |
144 |
try |
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24 Jan 06 |
nicklas |
145 |
{ |
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24 Jan 06 |
nicklas |
146 |
currentArrayDesign = batch.getArrayDesign(); |
1813 |
24 Jan 06 |
nicklas |
147 |
} |
1813 |
24 Jan 06 |
nicklas |
148 |
catch (PermissionDeniedException ex) |
1813 |
24 Jan 06 |
nicklas |
149 |
{ |
1813 |
24 Jan 06 |
nicklas |
150 |
readCurrentArrayDesign = false; |
1813 |
24 Jan 06 |
nicklas |
151 |
} |
1813 |
24 Jan 06 |
nicklas |
152 |
try |
1813 |
24 Jan 06 |
nicklas |
153 |
{ |
2949 |
24 Nov 06 |
martin |
154 |
currentPrintRobot = batch.getPrintRobot(); |
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24 Jan 06 |
nicklas |
155 |
} |
1813 |
24 Jan 06 |
nicklas |
156 |
catch (PermissionDeniedException ex) |
1813 |
24 Jan 06 |
nicklas |
157 |
{ |
1813 |
24 Jan 06 |
nicklas |
158 |
readCurrentPrintRobot = false; |
1813 |
24 Jan 06 |
nicklas |
159 |
} |
1813 |
24 Jan 06 |
nicklas |
160 |
try |
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24 Jan 06 |
nicklas |
161 |
{ |
2949 |
24 Nov 06 |
martin |
162 |
currentProtocol = batch.getProtocol(); |
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24 Jan 06 |
nicklas |
163 |
} |
1813 |
24 Jan 06 |
nicklas |
164 |
catch (PermissionDeniedException ex) |
1813 |
24 Jan 06 |
nicklas |
165 |
{ |
1813 |
24 Jan 06 |
nicklas |
166 |
readCurrentProtocol = false; |
1813 |
24 Jan 06 |
nicklas |
167 |
} |
6312 |
28 Aug 13 |
nicklas |
168 |
} |
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14 Dec 12 |
nicklas |
169 |
|
5498 |
17 Nov 10 |
nicklas |
170 |
JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, GuiContext.item(itemType), batch); |
7604 |
25 Feb 19 |
nicklas |
171 |
ExtensionsInvoker<TabAction> invoker = EditUtil.useEditExtensions(jspContext); |
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24 Jan 06 |
nicklas |
172 |
%> |
6312 |
28 Aug 13 |
nicklas |
173 |
<base:page type="popup" title="<%=title%>" id="edit-page"> |
6312 |
28 Aug 13 |
nicklas |
174 |
<base:head scripts="tabcontrol-2.js,~batches.js" styles="tabcontrol.css"> |
5498 |
17 Nov 10 |
nicklas |
175 |
<ext:scripts context="<%=jspContext%>" /> |
5498 |
17 Nov 10 |
nicklas |
176 |
<ext:stylesheets context="<%=jspContext%>" /> |
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24 Jan 06 |
nicklas |
177 |
</base:head> |
6312 |
28 Aug 13 |
nicklas |
178 |
<base:body> |
5917 |
19 Dec 11 |
nicklas |
179 |
<h1><%=title%> <base:help tabcontrol="settings" /></h1> |
6312 |
28 Aug 13 |
nicklas |
180 |
<div id="page-data" class="datacontainer" |
6312 |
28 Aug 13 |
nicklas |
181 |
data-printing-protocol="<%=SystemItems.getId(Protocol.PRINTING)%>" |
6312 |
28 Aug 13 |
nicklas |
182 |
data-print-robot="<%=SystemItems.getId(Hardware.PRINT_ROBOT)%>" |
6312 |
28 Aug 13 |
nicklas |
183 |
></div> |
6312 |
28 Aug 13 |
nicklas |
184 |
|
6162 |
10 Oct 12 |
nicklas |
185 |
<form action="index.jsp?ID=<%=ID%>" method="post" name="batch"> |
1813 |
24 Jan 06 |
nicklas |
186 |
<input type="hidden" name="cmd" value="UpdateItem"> |
1813 |
24 Jan 06 |
nicklas |
187 |
|
5917 |
19 Dec 11 |
nicklas |
188 |
<t:tabcontrol id="settings" |
5917 |
19 Dec 11 |
nicklas |
189 |
subclass="content dialogtabcontrol" |
6312 |
28 Aug 13 |
nicklas |
190 |
position="bottom" remember="<%=batch != null%>" |
5498 |
17 Nov 10 |
nicklas |
191 |
extensions="<%=invoker%>"> |
6312 |
28 Aug 13 |
nicklas |
192 |
<t:tab id="info" title="Array batch" helpid="arraybatch.edit"> |
5917 |
19 Dec 11 |
nicklas |
193 |
<table class="fullform input100"> |
1813 |
24 Jan 06 |
nicklas |
194 |
<tr> |
5917 |
19 Dec 11 |
nicklas |
195 |
<th>Name</th> |
6312 |
28 Aug 13 |
nicklas |
196 |
<td><input class="text required auto-init" data-auto-init="<%=batch == null ? "focus-select" : "focus" %>" |
6312 |
28 Aug 13 |
nicklas |
197 |
type="text" name="name" |
1813 |
24 Jan 06 |
nicklas |
198 |
value="<%=HTML.encodeTags(batch == null ? Values.getString(cc.getPropertyValue("name"), "New array batch") : batch.getName())%>" |
5917 |
19 Dec 11 |
nicklas |
199 |
maxlength="<%=ArrayBatch.MAX_NAME_LENGTH%>"></td> |
5917 |
19 Dec 11 |
nicklas |
200 |
<td></td> |
1813 |
24 Jan 06 |
nicklas |
201 |
</tr> |
1813 |
24 Jan 06 |
nicklas |
202 |
<tr> |
5917 |
19 Dec 11 |
nicklas |
203 |
<th>Array design</th> |
1813 |
24 Jan 06 |
nicklas |
204 |
<td> |
1813 |
24 Jan 06 |
nicklas |
205 |
<% |
1813 |
24 Jan 06 |
nicklas |
206 |
if (batch != null) |
1813 |
24 Jan 06 |
nicklas |
207 |
{ |
1813 |
24 Jan 06 |
nicklas |
208 |
%> |
1813 |
24 Jan 06 |
nicklas |
209 |
<%=Base.getEncodedName(currentArrayDesign, !readCurrentArrayDesign)%> |
1813 |
24 Jan 06 |
nicklas |
210 |
<% |
1813 |
24 Jan 06 |
nicklas |
211 |
} |
1813 |
24 Jan 06 |
nicklas |
212 |
else |
1813 |
24 Jan 06 |
nicklas |
213 |
{ |
1813 |
24 Jan 06 |
nicklas |
214 |
%> |
2598 |
28 Aug 06 |
nicklas |
215 |
<base:select |
2598 |
28 Aug 06 |
nicklas |
216 |
id="arraydesign_id" |
2598 |
28 Aug 06 |
nicklas |
217 |
clazz="selectionlist required" |
2598 |
28 Aug 06 |
nicklas |
218 |
required="true" |
2598 |
28 Aug 06 |
nicklas |
219 |
current="<%=currentArrayDesign%>" |
2598 |
28 Aug 06 |
nicklas |
220 |
denied="<%=!readCurrentArrayDesign%>" |
2598 |
28 Aug 06 |
nicklas |
221 |
recent="<%=recentArrayDesigns%>" |
5687 |
09 Aug 11 |
nicklas |
222 |
defaultitems="<%=defaultArrayDesigns%>" |
2598 |
28 Aug 06 |
nicklas |
223 |
newitem="true" |
2598 |
28 Aug 06 |
nicklas |
224 |
/> |
1813 |
24 Jan 06 |
nicklas |
225 |
<% |
1813 |
24 Jan 06 |
nicklas |
226 |
} |
1813 |
24 Jan 06 |
nicklas |
227 |
%> |
1813 |
24 Jan 06 |
nicklas |
228 |
</td> |
5917 |
19 Dec 11 |
nicklas |
229 |
<td></td> |
1813 |
24 Jan 06 |
nicklas |
230 |
</tr> |
1813 |
24 Jan 06 |
nicklas |
231 |
<tr> |
5917 |
19 Dec 11 |
nicklas |
232 |
<th>Print robot</th> |
1813 |
24 Jan 06 |
nicklas |
233 |
<td> |
2598 |
28 Aug 06 |
nicklas |
234 |
<base:select |
2598 |
28 Aug 06 |
nicklas |
235 |
id="printrobot_id" |
2598 |
28 Aug 06 |
nicklas |
236 |
clazz="selectionlist" |
2598 |
28 Aug 06 |
nicklas |
237 |
required="false" |
2598 |
28 Aug 06 |
nicklas |
238 |
current="<%=currentPrintRobot%>" |
2598 |
28 Aug 06 |
nicklas |
239 |
denied="<%=!readCurrentPrintRobot%>" |
2598 |
28 Aug 06 |
nicklas |
240 |
recent="<%=recentPrintRobots%>" |
5687 |
09 Aug 11 |
nicklas |
241 |
defaultitems="<%=defaultPrintRobots%>" |
2598 |
28 Aug 06 |
nicklas |
242 |
newitem="<%=batch == null%>" |
2598 |
28 Aug 06 |
nicklas |
243 |
/> |
1813 |
24 Jan 06 |
nicklas |
244 |
</td> |
5917 |
19 Dec 11 |
nicklas |
245 |
<td></td> |
1813 |
24 Jan 06 |
nicklas |
246 |
</tr> |
1813 |
24 Jan 06 |
nicklas |
247 |
<tr> |
5917 |
19 Dec 11 |
nicklas |
248 |
<th>Protocol</th> |
1813 |
24 Jan 06 |
nicklas |
249 |
<td> |
2598 |
28 Aug 06 |
nicklas |
250 |
<base:select |
2598 |
28 Aug 06 |
nicklas |
251 |
id="protocol_id" |
2598 |
28 Aug 06 |
nicklas |
252 |
clazz="selectionlist" |
2598 |
28 Aug 06 |
nicklas |
253 |
required="false" |
2598 |
28 Aug 06 |
nicklas |
254 |
current="<%=currentProtocol%>" |
2598 |
28 Aug 06 |
nicklas |
255 |
denied="<%=!readCurrentProtocol%>" |
2598 |
28 Aug 06 |
nicklas |
256 |
recent="<%=recentProtocols%>" |
5687 |
09 Aug 11 |
nicklas |
257 |
defaultitems="<%=defaultProtocols%>" |
2598 |
28 Aug 06 |
nicklas |
258 |
newitem="<%=batch == null%>" |
2598 |
28 Aug 06 |
nicklas |
259 |
/> |
1813 |
24 Jan 06 |
nicklas |
260 |
</td> |
5917 |
19 Dec 11 |
nicklas |
261 |
<td></td> |
1813 |
24 Jan 06 |
nicklas |
262 |
</tr> |
5917 |
19 Dec 11 |
nicklas |
263 |
<tr class="dynamic"> |
5917 |
19 Dec 11 |
nicklas |
264 |
<th>Description</th> |
5917 |
19 Dec 11 |
nicklas |
265 |
<td> |
6217 |
14 Dec 12 |
nicklas |
266 |
<textarea class="text" rows="6" name="description" id="description" |
1813 |
24 Jan 06 |
nicklas |
267 |
><%=HTML.encodeTags(batch == null ? cc.getPropertyValue("description") : batch.getDescription())%></textarea> |
1813 |
24 Jan 06 |
nicklas |
268 |
</td> |
5917 |
19 Dec 11 |
nicklas |
269 |
<td style="width: 20px;"> |
6215 |
13 Dec 12 |
nicklas |
270 |
<base:zoom textarea="description" title="Description" /> |
5917 |
19 Dec 11 |
nicklas |
271 |
</td> |
1813 |
24 Jan 06 |
nicklas |
272 |
</tr> |
1813 |
24 Jan 06 |
nicklas |
273 |
</table> |
1813 |
24 Jan 06 |
nicklas |
274 |
</t:tab> |
1813 |
24 Jan 06 |
nicklas |
275 |
|
6312 |
28 Aug 13 |
nicklas |
276 |
<t:tab id="annotations" title="Annotations & parameters" helpid="annotations.edit"> |
6254 |
22 Mar 13 |
nicklas |
277 |
<jsp:include page="../../common/annotations/annotate_frameset.jsp"> |
6254 |
22 Mar 13 |
nicklas |
278 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
6254 |
22 Mar 13 |
nicklas |
279 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
6254 |
22 Mar 13 |
nicklas |
280 |
<jsp:param name="ID" value="<%=ID%>" /> |
6254 |
22 Mar 13 |
nicklas |
281 |
</jsp:include> |
6254 |
22 Mar 13 |
nicklas |
282 |
</t:tab> |
1813 |
24 Jan 06 |
nicklas |
283 |
</t:tabcontrol> |
5917 |
19 Dec 11 |
nicklas |
284 |
</form> |
1813 |
24 Jan 06 |
nicklas |
285 |
|
5917 |
19 Dec 11 |
nicklas |
286 |
<div class="legend"> |
5946 |
03 Feb 12 |
nicklas |
287 |
<base:icon image="required.png" />= required information |
5917 |
19 Dec 11 |
nicklas |
288 |
</div> |
5917 |
19 Dec 11 |
nicklas |
289 |
|
5917 |
19 Dec 11 |
nicklas |
290 |
<base:buttongroup subclass="dialogbuttons"> |
6312 |
28 Aug 13 |
nicklas |
291 |
<base:button id="btnSave" title="Save" /> |
6312 |
28 Aug 13 |
nicklas |
292 |
<base:button id="close" title="Cancel" /> |
5917 |
19 Dec 11 |
nicklas |
293 |
</base:buttongroup> |
1813 |
24 Jan 06 |
nicklas |
294 |
</base:body> |
1813 |
24 Jan 06 |
nicklas |
295 |
</base:page> |
1813 |
24 Jan 06 |
nicklas |
296 |
<% |
1813 |
24 Jan 06 |
nicklas |
297 |
} |
1813 |
24 Jan 06 |
nicklas |
298 |
finally |
1813 |
24 Jan 06 |
nicklas |
299 |
{ |
1813 |
24 Jan 06 |
nicklas |
300 |
if (dc != null) dc.close(); |
1813 |
24 Jan 06 |
nicklas |
301 |
} |
1813 |
24 Jan 06 |
nicklas |
302 |
%> |