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<%-- $Id$ |
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------------------------------------------------------------------ |
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Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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Copyright (C) 2007 Martin Svensson |
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|
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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|
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You should have received a copy of the GNU General Public License |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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------------------------------------------------------------------ |
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|
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@author Nicklas |
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@version 2.0 |
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--%> |
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<%@ page pageEncoding="UTF-8" session="false" |
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import="net.sf.basedb.core.SessionControl" |
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import="net.sf.basedb.core.DbControl" |
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import="net.sf.basedb.core.SystemItems" |
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import="net.sf.basedb.core.Item" |
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import="net.sf.basedb.core.ItemContext" |
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import="net.sf.basedb.core.Permission" |
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import="net.sf.basedb.core.AnnotationType" |
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import="net.sf.basedb.core.AnnotationSet" |
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import="net.sf.basedb.core.PhysicalBioAssay" |
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import="net.sf.basedb.core.ArraySlide" |
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import="net.sf.basedb.core.ArrayBatch" |
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import="net.sf.basedb.core.ArrayDesign" |
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import="net.sf.basedb.core.User" |
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import="net.sf.basedb.core.Group" |
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import="net.sf.basedb.core.ItemQuery" |
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import="net.sf.basedb.core.Include" |
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import="net.sf.basedb.core.ItemResultList" |
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import="net.sf.basedb.core.ItemResultList" |
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import="net.sf.basedb.core.MultiPermissions" |
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import="net.sf.basedb.core.PermissionDeniedException" |
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import="net.sf.basedb.core.PluginDefinition" |
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import="net.sf.basedb.core.plugin.GuiContext" |
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import="net.sf.basedb.core.plugin.Plugin" |
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import="net.sf.basedb.core.Project" |
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import="net.sf.basedb.core.query.Orders" |
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import="net.sf.basedb.core.query.Hql" |
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import="net.sf.basedb.clients.web.Base" |
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import="net.sf.basedb.clients.web.ChangeHistoryUtil" |
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import="net.sf.basedb.clients.web.PermissionUtil" |
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import="net.sf.basedb.clients.web.util.HTML" |
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import="net.sf.basedb.util.Values" |
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import="net.sf.basedb.util.formatter.Formatter" |
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import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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import="net.sf.basedb.clients.web.extensions.JspContext" |
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import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ButtonAction" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil" |
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import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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import="java.util.Collections" |
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import="java.util.Date" |
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import="java.util.Map" |
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import="java.util.Set" |
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import="java.util.List" |
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%> |
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<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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<%! |
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private static final Item itemType = Item.ARRAYSLIDE; |
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private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM); |
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%> |
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<% |
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final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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final String ID = sc.getId(); |
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final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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final int itemId = cc.getId(); |
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final String tab = Values.getString(request.getParameter("tab"), "properties"); |
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final float scale = Base.getScale(sc); |
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final DbControl dc = sc.newDbControl(":View "+itemType); |
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try |
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{ |
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Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc); |
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Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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|
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String title = null; |
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ArraySlide slide = ArraySlide.getById(dc, itemId); |
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|
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final boolean writePermission = slide.hasPermission(Permission.WRITE); |
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final boolean deletePermission = slide.hasPermission(Permission.DELETE); |
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final boolean sharePermission = slide.hasPermission(Permission.SET_PERMISSION); |
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final boolean setOwnerPermission = slide.hasPermission(Permission.SET_OWNER); |
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final boolean isRemoved = slide.isRemoved(); |
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final boolean isUsed = isRemoved && slide.isUsed(); |
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final boolean deletePermanentlyPermission = deletePermission && !isUsed; |
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final boolean isOwner = slide.isOwner(); |
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JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, slide); |
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ExtensionsInvoker<ButtonAction> invoker = ToolbarUtil.useExtensions(jspContext); |
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%> |
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<base:page title="<%=title%>" id="view-page"> |
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<base:head scripts="tabcontrol-2.js,table.js,~slides.js" styles="toolbar.css,table.css,headertabcontrol.css,path.css"> |
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<ext:scripts context="<%=jspContext%>" /> |
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<ext:stylesheets context="<%=jspContext%>" /> |
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</base:head> |
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<base:body> |
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<p:path><p:pathelement |
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title="Array slides" href="<%="index.jsp?ID="+ID%>" |
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/><p:pathelement title="<%=HTML.encodeTags(slide.getName())%>" |
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/></p:path> |
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<div id="page-data" data-item-id="<%=itemId%>"></div> |
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|
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<t:tabcontrol |
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id="main" |
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subclass="content mastertabcontrol" |
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active="<%=tab%>"> |
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<t:tab id="properties" title="Properties"> |
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02 Feb 12 |
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<div> |
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02 Feb 12 |
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<table class="fullform bottomborder"> |
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<tr> |
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<th class="itemstatus"> |
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<base:icon |
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image="shared.png" |
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visible="<%=slide.isShared()%>" |
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tooltip="This item is shared to other users, groups and/or projects" |
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/> |
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<base:icon |
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id="btnDeletePermanently" |
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image="deleted.png" |
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tooltip="This item has been flagged for deletion. Click to delete it now." |
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02 Feb 12 |
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enabled="<%=deletePermanentlyPermission %>" |
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02 Feb 12 |
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visible="<%=isRemoved%>" |
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02 Feb 12 |
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/> |
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<base:icon |
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id="btnUsingItems" |
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image="used.png" |
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02 Feb 12 |
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tooltip="This item is used by other items and can't be permanently deleted. Show the items that are using this one" |
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02 Feb 12 |
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visible="<%=isRemoved && isUsed%>" /> |
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02 Feb 12 |
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</th> |
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<td style="padding: 0px;"> |
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<tbl:toolbar subclass="bottomborder bg-filled-50"> |
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02 Feb 12 |
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<tbl:button |
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id="btnEdit" |
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disabled="<%=!writePermission%>" |
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image="edit.png" |
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02 Feb 12 |
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title="Edit…" |
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tooltip="<%=writePermission ? "Edit this array slide" : "You do not have permission to edit this array slide"%>" |
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/> |
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<tbl:button |
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id="btnDelete" |
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disabled="<%=!deletePermission%>" |
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03 Feb 12 |
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image="delete.png" |
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02 Feb 12 |
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title="Delete" |
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02 Feb 12 |
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visible="<%=!slide.isRemoved()%>" |
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02 Feb 12 |
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tooltip="<%=deletePermission ? "Delete this array slide" : "You do not have permission to delete this array slide"%>" |
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/> |
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02 Feb 12 |
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<tbl:button |
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id="btnRestore" |
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disabled="<%=!writePermission%>" |
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03 Feb 12 |
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image="restore.png" |
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02 Feb 12 |
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title="Restore" |
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02 Feb 12 |
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visible="<%=slide.isRemoved()%>" |
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02 Feb 12 |
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tooltip="<%=writePermission ? "Restore this array slide" : "You do not have permission to restore this array slide"%>" |
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/> |
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02 Feb 12 |
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<tbl:button |
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id="btnShare" |
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02 Feb 12 |
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disabled="<%=!sharePermission%>" |
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02 Feb 12 |
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image="share.png" |
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02 Feb 12 |
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title="Share…" |
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02 Feb 12 |
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tooltip="<%=sharePermission ? "Share this array slide to other user, groups and projects" : "You do not have permission to share this array slide"%>" |
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/> |
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02 Feb 12 |
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<tbl:button |
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id="btnSetOwner" |
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02 Feb 12 |
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disabled="<%=!setOwnerPermission%>" |
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02 Feb 12 |
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image="take_ownership.png" |
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02 Feb 12 |
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title="Set owner…" |
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02 Feb 12 |
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tooltip="<%=setOwnerPermission ? "Change owner of this item" : "You do not have permission to change ownership of this item"%>" |
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02 Feb 12 |
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/> |
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02 Feb 12 |
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<tbl:button |
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15 Aug 13 |
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id="btnImport" |
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03 Feb 12 |
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image="import.png" |
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15 Aug 13 |
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data-plugin-type="IMPORT" |
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02 Feb 12 |
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title="Import…" |
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02 Feb 12 |
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tooltip="Import data" |
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02 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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02 Feb 12 |
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/> |
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02 Feb 12 |
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<tbl:button |
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15 Aug 13 |
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id="btnExport" |
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15 Aug 13 |
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image="export.png" |
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15 Aug 13 |
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data-plugin-type="EXPORT" |
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02 Feb 12 |
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title="Export…" |
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02 Feb 12 |
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tooltip="Export data" |
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02 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
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02 Feb 12 |
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/> |
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02 Feb 12 |
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202 |
<tbl:button |
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15 Aug 13 |
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id="btnRunPlugin" |
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15 Aug 13 |
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image="runplugin.png" |
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15 Aug 13 |
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data-plugin-type="OTHER" |
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02 Feb 12 |
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title="Run plugin…" |
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02 Feb 12 |
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tooltip="Run a plugin" |
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02 Feb 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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02 Feb 12 |
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/> |
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02 Feb 12 |
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<ext:render extensions="<%=invoker%>" context="<%=jspContext%>" |
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25 Feb 19 |
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wrapper="<%=new PrefixSuffixRenderer<ButtonAction>(jspContext, "<td>", "</td>") %>"/> |
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02 Feb 12 |
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<tbl:button |
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02 Feb 12 |
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image="help.png" |
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15 Aug 13 |
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subclass="auto-init" |
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15 Aug 13 |
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data-auto-init="help" |
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15 Aug 13 |
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data-help-id="arrayslide.view.properties" |
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02 Feb 12 |
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title="Help…" |
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02 Feb 12 |
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tooltip="Get help about this page" |
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02 Feb 12 |
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/> |
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02 Feb 12 |
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</tbl:toolbar> |
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02 Feb 12 |
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</td> |
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02 Feb 12 |
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</tr> |
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24 Jan 06 |
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<tr> |
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02 Feb 12 |
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<th>Name</th> |
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24 Jan 06 |
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<td><%=HTML.encodeTags(slide.getName())%></td> |
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24 Jan 06 |
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</tr> |
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24 Jan 06 |
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227 |
<tr> |
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02 Feb 12 |
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<th>Registered</th> |
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10 Dec 08 |
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<td><%=dateFormatter.format(slide.getEntryDate())%></td> |
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10 Dec 08 |
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230 |
</tr> |
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10 Dec 08 |
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231 |
<tr> |
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02 Feb 12 |
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<th>Barcode</th> |
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24 Jan 06 |
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<td><%=HTML.encodeTags(slide.getBarcode())%></td> |
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24 Jan 06 |
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</tr> |
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24 Jan 06 |
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235 |
<tr> |
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02 Feb 12 |
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<th>Destroyed</th> |
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24 Jan 06 |
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<td><%=slide.isDestroyed() ? "yes" : "no"%></td> |
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24 Jan 06 |
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</tr> |
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24 Jan 06 |
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239 |
<tr> |
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02 Feb 12 |
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<th>Physical bioassay</th> |
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26 May 11 |
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<td><base:propertyvalue item="<%=slide%>" property="physicalBioAssay" /></td> |
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29 Jun 06 |
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</tr> |
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29 Jun 06 |
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243 |
<tr> |
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02 Feb 12 |
nicklas |
244 |
<th>Array batch</th> |
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02 Feb 12 |
nicklas |
245 |
<td><base:propertyvalue item="<%=slide%>" property="arrayBatch" /></td> |
1812 |
24 Jan 06 |
nicklas |
246 |
</tr> |
1812 |
24 Jan 06 |
nicklas |
247 |
<tr> |
5944 |
02 Feb 12 |
nicklas |
248 |
<th class="subprompt">- index</th> |
5944 |
02 Feb 12 |
nicklas |
249 |
<td><%=slide.getBatchIndex()%></td> |
5944 |
02 Feb 12 |
nicklas |
250 |
</tr> |
5944 |
02 Feb 12 |
nicklas |
251 |
<tr> |
5944 |
02 Feb 12 |
nicklas |
252 |
<th>Array design</th> |
2449 |
29 Jun 06 |
nicklas |
253 |
<td><base:propertyvalue item="<%=slide%>" property="arrayBatch.arrayDesign" /></td> |
1812 |
24 Jan 06 |
nicklas |
254 |
</tr> |
1812 |
24 Jan 06 |
nicklas |
255 |
<tr> |
5944 |
02 Feb 12 |
nicklas |
256 |
<th>Owner</th> |
2449 |
29 Jun 06 |
nicklas |
257 |
<td><base:propertyvalue item="<%=slide%>" property="owner" /></td> |
1812 |
24 Jan 06 |
nicklas |
258 |
</tr> |
1812 |
24 Jan 06 |
nicklas |
259 |
<tr> |
5944 |
02 Feb 12 |
nicklas |
260 |
<th>Permissions</th> |
5944 |
02 Feb 12 |
nicklas |
261 |
<td><%=PermissionUtil.getFullPermissionNames(slide)%></td> |
5944 |
02 Feb 12 |
nicklas |
262 |
</tr> |
5944 |
02 Feb 12 |
nicklas |
263 |
<tr> |
5944 |
02 Feb 12 |
nicklas |
264 |
<th>Description</th> |
1812 |
24 Jan 06 |
nicklas |
265 |
<td><%=HTML.niceFormat(slide.getDescription())%></td> |
1812 |
24 Jan 06 |
nicklas |
266 |
</tr> |
1812 |
24 Jan 06 |
nicklas |
267 |
</table> |
5944 |
02 Feb 12 |
nicklas |
268 |
</div> |
5944 |
02 Feb 12 |
nicklas |
269 |
|
5499 |
17 Nov 10 |
nicklas |
270 |
<jsp:include page="../../common/anytoany/list_anytoany.jsp"> |
5499 |
17 Nov 10 |
nicklas |
271 |
<jsp:param name="ID" value="<%=ID%>" /> |
5499 |
17 Nov 10 |
nicklas |
272 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
5499 |
17 Nov 10 |
nicklas |
273 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
5499 |
17 Nov 10 |
nicklas |
274 |
<jsp:param name="title" value="Other items related to this slide" /> |
5499 |
17 Nov 10 |
nicklas |
275 |
</jsp:include> |
5935 |
26 Jan 12 |
nicklas |
276 |
<jsp:include page="../../common/share/list_share.jsp"> |
5935 |
26 Jan 12 |
nicklas |
277 |
<jsp:param name="ID" value="<%=ID%>" /> |
5935 |
26 Jan 12 |
nicklas |
278 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
5935 |
26 Jan 12 |
nicklas |
279 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
5935 |
26 Jan 12 |
nicklas |
280 |
<jsp:param name="title" value="Shared to" /> |
5935 |
26 Jan 12 |
nicklas |
281 |
</jsp:include> |
1861 |
30 Jan 06 |
nicklas |
282 |
</t:tab> |
1812 |
24 Jan 06 |
nicklas |
283 |
|
5935 |
26 Jan 12 |
nicklas |
284 |
<t:tab id="annotations" title="Annotations & parameters" |
6307 |
15 Aug 13 |
nicklas |
285 |
tooltip="View annotation values and protocol parameters" clazz="white"> |
6255 |
22 Mar 13 |
nicklas |
286 |
<jsp:include page="../../common/annotations/list_frameset.jsp"> |
1861 |
30 Jan 06 |
nicklas |
287 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
1861 |
30 Jan 06 |
nicklas |
288 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
1861 |
30 Jan 06 |
nicklas |
289 |
<jsp:param name="ID" value="<%=ID%>" /> |
1861 |
30 Jan 06 |
nicklas |
290 |
</jsp:include> |
1861 |
30 Jan 06 |
nicklas |
291 |
</t:tab> |
5935 |
26 Jan 12 |
nicklas |
292 |
|
4746 |
10 Feb 09 |
nicklas |
293 |
<t:tab id="overview" title="Overview" |
6307 |
15 Aug 13 |
nicklas |
294 |
tooltip="Display a tree overview of related items"> |
6242 |
25 Feb 13 |
nicklas |
295 |
<jsp:include page="../../common/overview/overview.jsp"> |
6242 |
25 Feb 13 |
nicklas |
296 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
6242 |
25 Feb 13 |
nicklas |
297 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
6242 |
25 Feb 13 |
nicklas |
298 |
<jsp:param name="ID" value="<%=ID%>" /> |
6242 |
25 Feb 13 |
nicklas |
299 |
</jsp:include> |
4746 |
10 Feb 09 |
nicklas |
300 |
</t:tab> |
7166 |
07 Jun 16 |
nicklas |
301 |
<t:tab id="history" title="History" |
7166 |
07 Jun 16 |
nicklas |
302 |
tooltip="Displays a log with the history of this item" |
6307 |
15 Aug 13 |
nicklas |
303 |
visible="<%=ChangeHistoryUtil.showChangeHistoryTab(sc)%>"> |
6244 |
25 Feb 13 |
nicklas |
304 |
<jsp:include page="../../common/history/frameset.jsp"> |
6244 |
25 Feb 13 |
nicklas |
305 |
<jsp:param name="item_type" value="<%=itemType.name()%>" /> |
6244 |
25 Feb 13 |
nicklas |
306 |
<jsp:param name="item_id" value="<%=itemId%>" /> |
6244 |
25 Feb 13 |
nicklas |
307 |
<jsp:param name="ID" value="<%=ID%>" /> |
6244 |
25 Feb 13 |
nicklas |
308 |
</jsp:include> |
5062 |
19 Aug 09 |
nicklas |
309 |
</t:tab> |
5944 |
02 Feb 12 |
nicklas |
310 |
</t:tabcontrol> |
1812 |
24 Jan 06 |
nicklas |
311 |
|
1812 |
24 Jan 06 |
nicklas |
312 |
</base:body> |
1812 |
24 Jan 06 |
nicklas |
313 |
</base:page> |
1812 |
24 Jan 06 |
nicklas |
314 |
<% |
1812 |
24 Jan 06 |
nicklas |
315 |
} |
1812 |
24 Jan 06 |
nicklas |
316 |
finally |
1812 |
24 Jan 06 |
nicklas |
317 |
{ |
1812 |
24 Jan 06 |
nicklas |
318 |
if (dc != null) dc.close(); |
1812 |
24 Jan 06 |
nicklas |
319 |
} |
1812 |
24 Jan 06 |
nicklas |
320 |
|
1812 |
24 Jan 06 |
nicklas |
321 |
%> |