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<%-- $Id$ |
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------------------------------------------------------------------ |
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Copyright (C) 2005 Nicklas Nordborg |
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Copyright (C) 2006 Johan Enell, Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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16 Aug 07 |
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Copyright (C) 2007 Nicklas Nordborg |
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|
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This file is part of BASE - BioArray Software Environment. |
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Available at http://base.thep.lu.se/ |
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|
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BASE is free software; you can redistribute it and/or |
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modify it under the terms of the GNU General Public License |
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05 Sep 08 |
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as published by the Free Software Foundation; either version 3 |
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of the License, or (at your option) any later version. |
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|
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BASE is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 Dec 05 |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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19 Dec 05 |
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GNU General Public License for more details. |
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|
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19 Dec 05 |
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You should have received a copy of the GNU General Public License |
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11 Sep 08 |
jari |
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along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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------------------------------------------------------------------ |
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|
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@author Nicklas |
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@version 2.0 |
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--%> |
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<%@ page pageEncoding="UTF-8" session="false" |
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import="net.sf.basedb.core.SessionControl" |
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import="net.sf.basedb.core.DbControl" |
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19 Dec 05 |
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import="net.sf.basedb.core.SystemItems" |
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19 Dec 05 |
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import="net.sf.basedb.core.Item" |
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19 Dec 05 |
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import="net.sf.basedb.core.ItemContext" |
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19 Dec 05 |
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import="net.sf.basedb.core.Permission" |
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19 Dec 05 |
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import="net.sf.basedb.core.ExtendedProperties" |
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19 Dec 05 |
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import="net.sf.basedb.core.ExtendedProperty" |
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19 Dec 05 |
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import="net.sf.basedb.core.Type" |
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19 Dec 05 |
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import="net.sf.basedb.core.Reporter" |
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19 Dec 05 |
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import="net.sf.basedb.core.ReporterType" |
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19 Dec 05 |
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import="net.sf.basedb.core.data.ReporterData" |
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19 Dec 05 |
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import="net.sf.basedb.core.ItemQuery" |
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19 Dec 05 |
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import="net.sf.basedb.core.ItemResultIterator" |
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import="net.sf.basedb.core.PermissionDeniedException" |
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import="net.sf.basedb.core.PluginDefinition" |
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09 Jan 06 |
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import="net.sf.basedb.core.plugin.GuiContext" |
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09 Jan 06 |
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import="net.sf.basedb.core.plugin.Plugin" |
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import="net.sf.basedb.core.query.Orders" |
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19 Dec 05 |
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import="net.sf.basedb.core.query.Hql" |
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19 Dec 05 |
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import="net.sf.basedb.clients.web.Base" |
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19 Dec 05 |
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import="net.sf.basedb.clients.web.util.HTML" |
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import="net.sf.basedb.util.Values" |
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22 Nov 06 |
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import="net.sf.basedb.util.formatter.Formatter" |
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22 Nov 06 |
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import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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03 Apr 09 |
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import="net.sf.basedb.clients.web.extensions.JspContext" |
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import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ButtonAction" |
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import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil" |
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import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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import="java.util.Date" |
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import="java.util.Map" |
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import="java.util.List" |
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%> |
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<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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<%! |
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private static final Item itemType = Item.REPORTER; |
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private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM); |
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%> |
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<% |
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final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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final String ID = sc.getId(); |
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final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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final int itemId = cc.getId(); |
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final float scale = Base.getScale(sc); |
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final DbControl dc = sc.newDbControl(":View "+itemType); |
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try |
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{ |
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Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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|
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19 Dec 05 |
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String title = null; |
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19 Dec 05 |
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ReporterData reporter = Reporter.getById(dc, itemId); |
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|
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final boolean writePermission = sc.hasPermission(Permission.WRITE, itemType); |
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final boolean deletePermission = sc.hasPermission(Permission.DELETE, itemType); |
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Formatter<Date> dateTimeFormatter = FormatterFactory.getDateTimeFormatter(sc); |
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Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc); |
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JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, reporter); |
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25 Feb 19 |
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ExtensionsInvoker<ButtonAction> invoker = ToolbarUtil.useExtensions(jspContext); |
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19 Dec 05 |
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%> |
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23 Aug 13 |
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<base:page title="<%=title%>" id="view-page"> |
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23 Aug 13 |
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<base:head scripts="tabcontrol-2.js,~reporters.js" styles="toolbar.css,headertabcontrol.css,path.css"> |
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03 Apr 09 |
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<ext:scripts context="<%=jspContext%>" /> |
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03 Apr 09 |
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<ext:stylesheets context="<%=jspContext%>" /> |
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19 Dec 05 |
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</base:head> |
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19 Dec 05 |
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<base:body> |
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30 Jan 12 |
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<p:path><p:pathelement |
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30 Jan 12 |
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title="Reporters" href="<%="index.jsp?ID="+ID%>" |
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30 Jan 12 |
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/><p:pathelement title="<%=HTML.encodeTags(reporter.getName())%>" |
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30 Jan 12 |
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/></p:path> |
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23 Aug 13 |
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<div id="page-data" data-item-id="<%=itemId%>"></div> |
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19 Dec 05 |
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|
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30 Jan 12 |
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<t:tabcontrol |
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30 Jan 12 |
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id="main" |
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30 Jan 12 |
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subclass="content mastertabcontrol" |
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30 Jan 12 |
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active="properties"> |
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27 Jan 06 |
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<t:tab id="properties" title="Properties"> |
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30 Jan 12 |
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<div> |
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30 Jan 12 |
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<table class="fullform bottomborder"> |
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19 Dec 05 |
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<tr> |
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30 Jan 12 |
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<th class="itemstatus"></th> |
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30 Jan 12 |
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<td style="padding: 0px;"> |
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18 Nov 14 |
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<tbl:toolbar subclass="bottomborder bg-filled-50"> |
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30 Jan 12 |
nicklas |
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<tbl:button |
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23 Aug 13 |
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id="btnEdit" |
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01 Feb 12 |
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disabled="<%=!writePermission%>" |
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02 Feb 12 |
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image="edit.png" |
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30 Jan 12 |
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title="Edit…" |
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30 Jan 12 |
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tooltip="<%=writePermission ? "Edit this reporter" : "You do not have permission to edit this reporter"%>" |
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30 Jan 12 |
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/> |
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30 Jan 12 |
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<tbl:button |
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23 Aug 13 |
nicklas |
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id="btnDelete" |
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23 Aug 13 |
nicklas |
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data-confirm="1" |
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01 Feb 12 |
nicklas |
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disabled="<%=!deletePermission%>" |
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03 Feb 12 |
nicklas |
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image="delete.png" |
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30 Jan 12 |
nicklas |
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title="Delete…" |
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30 Jan 12 |
nicklas |
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tooltip="<%=deletePermission ? "Delete this reporter" : "You do not have permission to delete this reporter"%>" |
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30 Jan 12 |
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/> |
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30 Jan 12 |
nicklas |
131 |
<tbl:button |
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23 Aug 13 |
nicklas |
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id="btnImport" |
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03 Feb 12 |
nicklas |
133 |
image="import.png" |
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23 Aug 13 |
nicklas |
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data-plugin-type="IMPORT" |
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30 Jan 12 |
nicklas |
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title="Import…" |
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30 Jan 12 |
nicklas |
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tooltip="Import data" |
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30 Jan 12 |
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visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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30 Jan 12 |
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/> |
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30 Jan 12 |
nicklas |
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<tbl:button |
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23 Aug 13 |
nicklas |
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id="btnExport" |
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23 Aug 13 |
nicklas |
141 |
image="export.png" |
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23 Aug 13 |
nicklas |
142 |
data-plugin-type="EXPORT" |
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30 Jan 12 |
nicklas |
143 |
title="Export…" |
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30 Jan 12 |
nicklas |
144 |
tooltip="Export data" |
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30 Jan 12 |
nicklas |
145 |
visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
5939 |
30 Jan 12 |
nicklas |
146 |
/> |
5939 |
30 Jan 12 |
nicklas |
147 |
<tbl:button |
6311 |
23 Aug 13 |
nicklas |
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id="btnRunPlugin" |
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23 Aug 13 |
nicklas |
149 |
image="runplugin.png" |
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23 Aug 13 |
nicklas |
150 |
data-plugin-type="OTHER" |
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30 Jan 12 |
nicklas |
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title="Run plugin…" |
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30 Jan 12 |
nicklas |
152 |
tooltip="Run a plugin" |
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30 Jan 12 |
nicklas |
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visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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30 Jan 12 |
nicklas |
154 |
/> |
5939 |
30 Jan 12 |
nicklas |
155 |
<tbl:button |
5939 |
30 Jan 12 |
nicklas |
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image="help.png" |
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23 Aug 13 |
nicklas |
157 |
subclass="auto-init" |
6311 |
23 Aug 13 |
nicklas |
158 |
data-auto-init="help" |
6311 |
23 Aug 13 |
nicklas |
159 |
data-help-id="reporter.view.properties" |
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30 Jan 12 |
nicklas |
160 |
title="Help…" |
5939 |
30 Jan 12 |
nicklas |
161 |
tooltip="Get help about this page" |
5939 |
30 Jan 12 |
nicklas |
162 |
/> |
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30 Jan 12 |
nicklas |
163 |
<ext:render extensions="<%=invoker%>" context="<%=jspContext%>" |
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25 Feb 19 |
nicklas |
164 |
wrapper="<%=new PrefixSuffixRenderer<ButtonAction>(jspContext, "<td>", "</td>") %>"/> |
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30 Jan 12 |
nicklas |
165 |
</tbl:toolbar> |
5939 |
30 Jan 12 |
nicklas |
166 |
</td> |
5939 |
30 Jan 12 |
nicklas |
167 |
</tr> |
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30 Jan 12 |
nicklas |
168 |
<tr> |
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30 Jan 12 |
nicklas |
169 |
<th>Name</th> |
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19 Dec 05 |
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<td><%=HTML.encodeTags(reporter.getName())%></td> |
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19 Dec 05 |
nicklas |
171 |
</tr> |
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19 Dec 05 |
nicklas |
172 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
173 |
<th>External ID</th> |
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30 Jan 12 |
nicklas |
174 |
<td><%=HTML.encodeTags(reporter.getExternalId())%></td> |
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10 Dec 08 |
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175 |
</tr> |
4698 |
10 Dec 08 |
nicklas |
176 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
177 |
<th>Type</th> |
5939 |
30 Jan 12 |
nicklas |
178 |
<td><base:propertyvalue dbcontrol="<%=dc%>" item="<%=reporter%>" property="reporterType" /></td> |
4698 |
10 Dec 08 |
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179 |
</tr> |
4698 |
10 Dec 08 |
nicklas |
180 |
<tr> |
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30 Jan 12 |
nicklas |
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<th>Registered</th> |
5939 |
30 Jan 12 |
nicklas |
182 |
<td><%=dateFormatter.format(reporter.getEntryDate())%></td> |
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10 Dec 08 |
nicklas |
183 |
</tr> |
4698 |
10 Dec 08 |
nicklas |
184 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
185 |
<th>Last update</th> |
5939 |
30 Jan 12 |
nicklas |
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<td><%=dateTimeFormatter.format(reporter.getLastUpdate())%></td> |
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19 Dec 05 |
nicklas |
187 |
</tr> |
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19 Dec 05 |
nicklas |
188 |
<tr> |
5943 |
01 Feb 12 |
nicklas |
189 |
<th class="subprompt">- from/by</th> |
5939 |
30 Jan 12 |
nicklas |
190 |
<td><%=HTML.niceFormat(reporter.getLastSource())%></td> |
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19 Dec 05 |
nicklas |
191 |
</tr> |
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19 Dec 05 |
nicklas |
192 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
193 |
<th>Gene symbol</th> |
1727 |
19 Dec 05 |
nicklas |
194 |
<td><%=HTML.encodeTags(reporter.getSymbol())%></td> |
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19 Dec 05 |
nicklas |
195 |
</tr> |
5939 |
30 Jan 12 |
nicklas |
196 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
197 |
<th>Permissions</th> |
5939 |
30 Jan 12 |
nicklas |
198 |
<td> |
5939 |
30 Jan 12 |
nicklas |
199 |
<%=sc.hasPermission(Permission.READ, itemType) ? "Read" : ""%> |
5939 |
30 Jan 12 |
nicklas |
200 |
<%=sc.hasPermission(Permission.USE, itemType) ? ", Use" : ""%> |
5939 |
30 Jan 12 |
nicklas |
201 |
<%=sc.hasPermission(Permission.WRITE, itemType) ? ", Write" : ""%> |
5939 |
30 Jan 12 |
nicklas |
202 |
<%=sc.hasPermission(Permission.DELETE, itemType) ? ", Delete" : ""%> |
5939 |
30 Jan 12 |
nicklas |
203 |
</td> |
5939 |
30 Jan 12 |
nicklas |
204 |
</tr> |
5939 |
30 Jan 12 |
nicklas |
205 |
<tr> |
5939 |
30 Jan 12 |
nicklas |
206 |
<th>Description</th> |
1939 |
08 Feb 06 |
nicklas |
207 |
<td><%=HTML.niceFormat(reporter.getDescription())%></td> |
1727 |
19 Dec 05 |
nicklas |
208 |
</tr> |
1727 |
19 Dec 05 |
nicklas |
209 |
</table> |
5939 |
30 Jan 12 |
nicklas |
210 |
</div> |
5045 |
12 Aug 09 |
martin |
211 |
<% |
5045 |
12 Aug 09 |
martin |
212 |
List<ExtendedProperty> reporterProperties = ExtendedProperties.getProperties("ReporterData"); |
5045 |
12 Aug 09 |
martin |
213 |
%> |
5045 |
12 Aug 09 |
martin |
214 |
<base:section |
5045 |
12 Aug 09 |
martin |
215 |
id="extendedProperties" |
5045 |
12 Aug 09 |
martin |
216 |
title="<%="Extended properties (" + reporterProperties.size() + ")"%>" |
5045 |
12 Aug 09 |
martin |
217 |
context="<%=cc%>" |
5045 |
12 Aug 09 |
martin |
218 |
> |
5939 |
30 Jan 12 |
nicklas |
219 |
<table class="fullform fullborder"> |
5045 |
12 Aug 09 |
martin |
220 |
<% |
5045 |
12 Aug 09 |
martin |
221 |
if (reporterProperties != null) |
2313 |
23 May 06 |
nicklas |
222 |
{ |
5045 |
12 Aug 09 |
martin |
223 |
boolean needsTr = true; |
5045 |
12 Aug 09 |
martin |
224 |
for (ExtendedProperty ep : reporterProperties) |
5045 |
12 Aug 09 |
martin |
225 |
{ |
5045 |
12 Aug 09 |
martin |
226 |
String name = ep.getName(); |
7605 |
26 Feb 19 |
nicklas |
227 |
Formatter<Object> f = FormatterFactory.getExtendedPropertyFormatter(sc, ep); |
5045 |
12 Aug 09 |
martin |
228 |
String value = f.format(reporter.getExtended(name)); |
5045 |
12 Aug 09 |
martin |
229 |
%> |
5939 |
30 Jan 12 |
nicklas |
230 |
<%=needsTr ? "<tr><th>" : "<th class=\"leftborder\">" %> |
5939 |
30 Jan 12 |
nicklas |
231 |
<%=HTML.encodeTags(ep.getTitle())%></th> |
5045 |
12 Aug 09 |
martin |
232 |
<td><%=value%></td> |
5045 |
12 Aug 09 |
martin |
233 |
<%=needsTr ? "" : "</tr>"%> |
5045 |
12 Aug 09 |
martin |
234 |
<% |
5045 |
12 Aug 09 |
martin |
235 |
needsTr = !needsTr; |
5045 |
12 Aug 09 |
martin |
236 |
} |
2747 |
19 Oct 06 |
enell |
237 |
%> |
5939 |
30 Jan 12 |
nicklas |
238 |
<%=needsTr ? "" : "<th class=\"leftborder\"></th><td></td></tr>"%> |
2747 |
19 Oct 06 |
enell |
239 |
<% |
2313 |
23 May 06 |
nicklas |
240 |
} |
1727 |
19 Dec 05 |
nicklas |
241 |
%> |
5045 |
12 Aug 09 |
martin |
242 |
</table> |
5045 |
12 Aug 09 |
martin |
243 |
</base:section> |
5939 |
30 Jan 12 |
nicklas |
244 |
</t:tab> |
5939 |
30 Jan 12 |
nicklas |
245 |
</t:tabcontrol> |
1727 |
19 Dec 05 |
nicklas |
246 |
|
1853 |
27 Jan 06 |
nicklas |
247 |
|
1727 |
19 Dec 05 |
nicklas |
248 |
</base:body> |
1727 |
19 Dec 05 |
nicklas |
249 |
</base:page> |
1727 |
19 Dec 05 |
nicklas |
250 |
<% |
1727 |
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nicklas |
251 |
} |
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19 Dec 05 |
nicklas |
252 |
finally |
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nicklas |
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{ |
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nicklas |
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if (dc != null) dc.close(); |
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nicklas |
255 |
} |
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nicklas |
256 |
|
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nicklas |
257 |
%> |