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26 Feb 07 |
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<html><body> |
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26 Feb 07 |
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<p><font size = +1><b>HCL</b></font> - |
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26 Feb 07 |
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3 |
<b>Hierarchical Clustering</b> |
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26 Feb 07 |
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4 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9843981&query_hl=4&itool=pubmed_docsum\"> |
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26 Feb 07 |
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<br>Eisen, M.B., P.T. Spellman, P.O. Brown, and D. Botstein (1998) |
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26 Feb 07 |
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6 |
</a> |
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26 Feb 07 |
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7 |
Cluster analysis and display of genome-wide expression patterns. |
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26 Feb 07 |
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8 |
<i>Proceedings of the National Academy of Sciences USA </i> |
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26 Feb 07 |
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9 |
95:14863-14868. |
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26 Feb 07 |
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10 |
|
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26 Feb 07 |
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11 |
<br><p><font size = +1><b>ST</b></font> - |
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26 Feb 07 |
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12 |
<b>Support trees (Bootstrapping)</b> |
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26 Feb 07 |
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13 |
<br>Graur, D., and W.-H. Li. 2000. |
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26 Feb 07 |
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<i>Fundamentals of Molecular Evolution. Second Edition.</i> |
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26 Feb 07 |
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15 |
Sinauer Associates, Sunderland, MA. pp 209-210 |
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26 Feb 07 |
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16 |
|
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26 Feb 07 |
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<br><p><font size = +1><b>SOTA</b></font> - |
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26 Feb 07 |
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18 |
|
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26 Feb 07 |
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19 |
<b>Self-organizing trees</b> |
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26 Feb 07 |
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20 |
|
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26 Feb 07 |
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21 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11238068&query_hl=7&itool=pubmed_docsum\"> |
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26 Feb 07 |
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22 |
<br>Herrero J., A. Valencia, J. Dopazo (2001). |
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26 Feb 07 |
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23 |
</a> |
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26 Feb 07 |
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24 |
A hierarchical unsupervised growing neural network for clustering gene |
2 |
26 Feb 07 |
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25 |
expression patterns. <i>Bioinformatics</i> 17(2):126-136. |
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26 Feb 07 |
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26 |
|
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26 Feb 07 |
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27 |
<br><p><a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9069183&query_hl=9&itool=pubmed_docsum\"> |
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26 Feb 07 |
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28 |
Dopazo, J., and J. M. Carazo (1997). |
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26 Feb 07 |
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29 |
</a> |
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26 Feb 07 |
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30 |
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology |
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26 Feb 07 |
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31 |
of a phylogenetic tree. <i>Journal of Molecular Evolution</i> 44:226-233. |
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26 Feb 07 |
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32 |
|
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26 Feb 07 |
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33 |
<br><p><font size = +1><b>KMC</b></font> - |
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26 Feb 07 |
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34 |
<b>K-Means</b> |
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26 Feb 07 |
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35 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10783168&query_hl=11&itool=pubmed_docsum\""> |
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26 Feb 07 |
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36 |
<br>Soukas, A., P. Cohen, N.D. Socci, and J.M. Friedman (2000) |
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26 Feb 07 |
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37 |
</a> |
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26 Feb 07 |
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38 |
Leptin-specific patterns of gene expression in white adipose tissue. |
2 |
26 Feb 07 |
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39 |
<i>Genes and Development</i> 14:963-980. |
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26 Feb 07 |
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40 |
|
2 |
26 Feb 07 |
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41 |
<br><p><font size = +1><b>SOM</b></font> - |
2 |
26 Feb 07 |
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42 |
<b>Self-Organizing Maps</b> |
2 |
26 Feb 07 |
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43 |
<br>Kohonen, T. (1982) |
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26 Feb 07 |
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44 |
Self-organized formation of topologically correct feature maps. <i>Biological Cybernetics</i> 43:59-69 |
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26 Feb 07 |
jari |
45 |
<br><p><a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10077610&query_hl=20&itool=pubmed_docsum\"> |
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26 Feb 07 |
jari |
46 |
Tamayo, P., D. Slonim, J. Masirov, Q. Zhu, S. Kitareewan, |
2 |
26 Feb 07 |
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47 |
</a> |
2 |
26 Feb 07 |
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48 |
E. Dmitrovsky, E.S. Lander, and T.R. Golub (1999) |
2 |
26 Feb 07 |
jari |
49 |
Interpreting patterns of gene expression with self-organizing maps: Methods and application |
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26 Feb 07 |
jari |
50 |
to hematopoietic differentiation. <i>Proceedings of the National Academy of Sciences USA </i> |
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26 Feb 07 |
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51 |
96:2907-2912. |
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26 Feb 07 |
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52 |
|
2 |
26 Feb 07 |
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53 |
<br><p><font size = +1><b>CAST</b></font> - |
2 |
26 Feb 07 |
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54 |
<b>Clustering Affinity Search Technique</b> |
2 |
26 Feb 07 |
jari |
55 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10582567&query_hl=23&itool=pubmed_docsum\"> |
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26 Feb 07 |
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56 |
<br>Ben-Dor, A., R. Shamir, and Z. Yakhini (1999) |
2 |
26 Feb 07 |
jari |
57 |
</a> |
2 |
26 Feb 07 |
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58 |
Clustering gene expression patterns. |
2 |
26 Feb 07 |
jari |
59 |
<i>Journal of Computational Biology</i> 6:281-297. |
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26 Feb 07 |
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60 |
|
2 |
26 Feb 07 |
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61 |
<br><p><font size = +1><b>QTC</b></font> - |
2 |
26 Feb 07 |
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62 |
<b>Jackknife Clustering</b> |
2 |
26 Feb 07 |
jari |
63 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10568750&query_hl=26&itool=pubmed_docsum\" |
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26 Feb 07 |
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64 |
> |
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26 Feb 07 |
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65 |
<br>Heyer, L.J., S. Kruglyak, and S. Yooseph (1999) |
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26 Feb 07 |
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66 |
</a> |
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26 Feb 07 |
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67 |
Exploring expression data: identification and analysis of coexpressed genes. |
2 |
26 Feb 07 |
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68 |
<i>Genome Research</i> 9:1106-1115. |
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26 Feb 07 |
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69 |
|
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26 Feb 07 |
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70 |
<br><p><font size = +1><b>GSH</b></font> - |
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26 Feb 07 |
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<b>Gene shaving</b> |
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26 Feb 07 |
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<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11178228&query_hl=28&itool=pubmed_docsum\"> |
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26 Feb 07 |
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73 |
<br>Hastie, T. et al. (2000). |
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26 Feb 07 |
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74 |
</a> |
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26 Feb 07 |
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75 |
'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns |
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26 Feb 07 |
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76 |
Genome Biology 1(2):research0003.1-0003.21. |
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26 Feb 07 |
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77 |
|
2 |
26 Feb 07 |
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78 |
<br><p><font size = +1><b>FOM</b></font> - |
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26 Feb 07 |
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79 |
<b>Figures of Merit</b> |
2 |
26 Feb 07 |
jari |
80 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11301299&query_hl=31&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
81 |
<br>Yeung, K.Y., D.R. Haynor, and W.L. Ruzzo (2001) |
2 |
26 Feb 07 |
jari |
82 |
</a> |
2 |
26 Feb 07 |
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83 |
Validating clustering for gene expression data. |
2 |
26 Feb 07 |
jari |
84 |
<i>Bioinformatics</i> 17:309-318. |
2 |
26 Feb 07 |
jari |
85 |
|
2 |
26 Feb 07 |
jari |
86 |
<br><p><font size = +1><b>PCA</b></font> - |
2 |
26 Feb 07 |
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87 |
<b>Principal Components Analysis</b> |
2 |
26 Feb 07 |
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88 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10902193&query_hl=33&itool=pubmed_docsum\" |
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26 Feb 07 |
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89 |
> |
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26 Feb 07 |
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90 |
<br>Raychaudhuri, S., J. M. Stuart, & R. B. Altman (2000) |
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26 Feb 07 |
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91 |
</a> |
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26 Feb 07 |
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92 |
Principal components analysis to summarize microarray experiments: |
2 |
26 Feb 07 |
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93 |
application to sporulation time series. |
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26 Feb 07 |
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94 |
<i>Pacific Symposium on Biocomputing 2000, Honolulu, Hawaii,</i> 452-463. |
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26 Feb 07 |
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95 |
Available at http://smi-web.stanford.edu/pubs/SMI_Abstracts/SMI-1999-0804.html |
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26 Feb 07 |
jari |
96 |
|
2 |
26 Feb 07 |
jari |
97 |
<br><p><font size = +1><b>COA</b></font> - |
2 |
26 Feb 07 |
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98 |
<b>Correspondence Analysis</b> |
2 |
26 Feb 07 |
jari |
99 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11535808&query_hl=35&itool=pubmed_docsum\"> |
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26 Feb 07 |
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100 |
<br>Fellenberg K. et al. (2001) |
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26 Feb 07 |
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101 |
</a> |
2 |
26 Feb 07 |
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102 |
Correspondence analysis applied to microarray data. |
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26 Feb 07 |
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103 |
<i>Proceedings of the National Academy of Sciences USA</i> 98: 10781-10786 |
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26 Feb 07 |
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104 |
<br><p><a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12490444&query_hl=37&itool=pubmed_docsum\"> |
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26 Feb 07 |
jari |
105 |
Culhane A.C. et al. (2002) |
2 |
26 Feb 07 |
jari |
106 |
</a> |
2 |
26 Feb 07 |
jari |
107 |
Between-group analysis of microarray data. |
2 |
26 Feb 07 |
jari |
108 |
<i>Bioinformatics</i> 18:1600-1608. |
2 |
26 Feb 07 |
jari |
109 |
|
2 |
26 Feb 07 |
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110 |
<br><p><font size = +1><b>RN</b></font> - |
2 |
26 Feb 07 |
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111 |
<b>Relevance networks</b> |
2 |
26 Feb 07 |
jari |
112 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11027309&query_hl=39&itool=pubmed_docsum\" |
2 |
26 Feb 07 |
jari |
113 |
> |
2 |
26 Feb 07 |
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114 |
<br>Butte, A.J., P. Tamayo, D. Slonim, T.R. Golub and I.S. Kohane (2000) |
2 |
26 Feb 07 |
jari |
115 |
</a> |
2 |
26 Feb 07 |
jari |
116 |
Discovering functional relationships between RNA expression and chemotherapautic |
2 |
26 Feb 07 |
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117 |
susceptibility using relevance networks. |
2 |
26 Feb 07 |
jari |
118 |
<i>Proceedings of the National Academy of Sciences USA</i> 97: 12182-12186 |
2 |
26 Feb 07 |
jari |
119 |
|
2 |
26 Feb 07 |
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120 |
<br><p><font size = +1><b>PTM</b></font> - |
2 |
26 Feb 07 |
jari |
121 |
<b>Template Matching</b> |
2 |
26 Feb 07 |
jari |
122 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11597334&query_hl=42&itool=pubmed_docsum\" |
2 |
26 Feb 07 |
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123 |
> |
2 |
26 Feb 07 |
jari |
124 |
<br>Pavlidis, P., and W.S. Noble (2001) |
2 |
26 Feb 07 |
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125 |
</a> |
2 |
26 Feb 07 |
jari |
126 |
Analysis of strain and regional variation in gene expression in mouse brain. |
2 |
26 Feb 07 |
jari |
127 |
<i>Genome Biology</i> 2:research0042.1-0042.15 |
2 |
26 Feb 07 |
jari |
128 |
|
2 |
26 Feb 07 |
jari |
129 |
<br><p><font size = +1><b>SAM</b></font> - |
2 |
26 Feb 07 |
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130 |
<b>Significance Analysis of Microarrays</b> |
2 |
26 Feb 07 |
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131 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11309499&query_hl=44&itool=pubmed_docsum\" |
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26 Feb 07 |
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132 |
> |
2 |
26 Feb 07 |
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133 |
<br>Tusher, V.G., R. Tibshirani and G. Chu. (2001) |
2 |
26 Feb 07 |
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134 |
</a> |
2 |
26 Feb 07 |
jari |
135 |
Significance analysis of microarrays applied to the ionizing radiation response. |
2 |
26 Feb 07 |
jari |
136 |
<i>Proceedings of the National Academy of Sciences USA</i> 98: 5116-5121. |
2 |
26 Feb 07 |
jari |
137 |
|
2 |
26 Feb 07 |
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138 |
<br><p><a href="http://www-stat.stanford.edu/~tibs/SAM/"> |
2 |
26 Feb 07 |
jari |
139 |
Chu, G., B. Narasimhan, R. Tibshirani and V. Tusher (2002). |
2 |
26 Feb 07 |
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140 |
</a> |
2 |
26 Feb 07 |
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141 |
SAM \"Significance Analysis of Microarrays\" Users Guide and Technical Document. |
2 |
26 Feb 07 |
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142 |
http://www-stat.stanford.edu/~tibs/SAM/ |
2 |
26 Feb 07 |
jari |
143 |
|
2 |
26 Feb 07 |
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144 |
<br><p><font size = +1><b>ANOVA</b></font> - |
2 |
26 Feb 07 |
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145 |
<b>One-way Analysis of Variance</b> |
2 |
26 Feb 07 |
jari |
146 |
|
2 |
26 Feb 07 |
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147 |
<br>Zar, J.H. 1999. Biostatistical Analysis. 4th ed. Prentice Hall, NJ. |
2 |
26 Feb 07 |
jari |
148 |
|
2 |
26 Feb 07 |
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149 |
<br><p><font size = +1><b>TTEST</b></font> - |
2 |
26 Feb 07 |
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150 |
<b>T-Tests</b> |
2 |
26 Feb 07 |
jari |
151 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12016052&query_hl=48&itool=pubmed_docsum\" |
2 |
26 Feb 07 |
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152 |
> |
2 |
26 Feb 07 |
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153 |
<br>Pan, W. (2002). |
2 |
26 Feb 07 |
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154 |
</a> |
2 |
26 Feb 07 |
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155 |
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments |
2 |
26 Feb 07 |
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156 |
<i>Bioinformatics</i> 18: 546-554. |
2 |
26 Feb 07 |
jari |
157 |
|
2 |
26 Feb 07 |
jari |
158 |
<br><p>Dudoit, S., Y.H. Yang, M.J. Callow, and T. Speed (2000). |
2 |
26 Feb 07 |
jari |
159 |
Statistical methods for identifying differentially expressed genes |
2 |
26 Feb 07 |
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160 |
in replicated cDNA microarray experiments. <i>Technical report 2000</i> |
2 |
26 Feb 07 |
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161 |
Statistics Department, University of California, Berkeley. |
2 |
26 Feb 07 |
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162 |
|
2 |
26 Feb 07 |
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163 |
<br><p>Welch, B.L. (1947). |
2 |
26 Feb 07 |
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164 |
The generalization of ‘students’ problem when several different population variances are involved. |
2 |
26 Feb 07 |
jari |
165 |
<i>Biometrika</i> 34: 28-35. |
2 |
26 Feb 07 |
jari |
166 |
<br><p> <a href=\"http://linus.nci.nih.gov/~brb/TechReport.htm\" |
2 |
26 Feb 07 |
jari |
167 |
> |
2 |
26 Feb 07 |
jari |
168 |
Korn, E.L., J.F. Troendle, L.M. McShane, R. Simon (2001). |
2 |
26 Feb 07 |
jari |
169 |
</a> |
2 |
26 Feb 07 |
jari |
170 |
Controlling the number of false discoveries: application to high-dimensional genomic data |
2 |
26 Feb 07 |
jari |
171 |
<i> Technical report 003</i>, Biometric Research Branch, National Cancer Institute. http://linus.nci.nih.gov/~brb/TechReport.htm |
2 |
26 Feb 07 |
jari |
172 |
|
2 |
26 Feb 07 |
jari |
173 |
<br><p>Korn, E.L., J.F. Troendle, L.M. McShane, R. Simon (2004). |
2 |
26 Feb 07 |
jari |
174 |
Controlling the number of false discoveries: application to high-dimensional genomic data |
2 |
26 Feb 07 |
jari |
175 |
<i>Journal of Statistical Planning and Inference</i> 124: 379-398. |
2 |
26 Feb 07 |
jari |
176 |
|
2 |
26 Feb 07 |
jari |
177 |
<br><p><font size = +1><b>TFA</b></font> - |
2 |
26 Feb 07 |
jari |
178 |
<b>Two Factor ANOVA</b> |
2 |
26 Feb 07 |
jari |
179 |
|
2 |
26 Feb 07 |
jari |
180 |
<br>Keppel, G., and S. Zedeck. (1989). Data Analysis for Research Designs. W. H. Freeman and Co., NY. |
2 |
26 Feb 07 |
jari |
181 |
<br><p>Manly, B.F.J. (1997). Randomization, Bootstrap and Monte Carlo Methods in Biology. 2nd ed. Chapman and Hall / CRC , FL. |
2 |
26 Feb 07 |
jari |
182 |
<br><p>Zar, J.H. 1999. Biostatistical Analysis. 4th ed. Prentice Hall, NJ. |
2 |
26 Feb 07 |
jari |
183 |
|
2 |
26 Feb 07 |
jari |
184 |
<br><p><font size = +1><b>SVM</b></font> - |
2 |
26 Feb 07 |
jari |
185 |
<b>Support Vector Machines</b> |
2 |
26 Feb 07 |
jari |
186 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10618406&query_hl=86&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
187 |
<br>Brown, M.P., W.N. Grundy, D. Lin, N. Cristianini, C.W. Sugnet, |
2 |
26 Feb 07 |
jari |
188 |
T.S. Furey, M. Ares, Jr., and D. Haussler (2000) |
2 |
26 Feb 07 |
jari |
189 |
</a> |
2 |
26 Feb 07 |
jari |
190 |
Knowledge-based analysis of microarray gene expression data by using support vector machines. |
2 |
26 Feb 07 |
jari |
191 |
<i>Proceedings of the National Academy of Sciences USA</i> 97: 262-267. |
2 |
26 Feb 07 |
jari |
192 |
|
2 |
26 Feb 07 |
jari |
193 |
<br><p><font size = +1><b>KNNC</b></font> - |
2 |
26 Feb 07 |
jari |
194 |
<b>K-Nearest Neighbor Classification</b> |
2 |
26 Feb 07 |
jari |
195 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11779842&query_hl=75&itool=pubmed_docsum\" |
2 |
26 Feb 07 |
jari |
196 |
> |
2 |
26 Feb 07 |
jari |
197 |
<br>Theilhaber, J., Connolly, S. Roman-Roman, S. Bushnell, A. Jackson, K. Call, T. Garcia, R. Baron (2002) |
2 |
26 Feb 07 |
jari |
198 |
</a> |
2 |
26 Feb 07 |
jari |
199 |
Finding Genes in the C2Cl2 Osteogenic Pathway by K-Nearest-Neighbor Classification of Expression Data. |
2 |
26 Feb 07 |
jari |
200 |
<i>Genome Research</i> 12:165-176 |
2 |
26 Feb 07 |
jari |
201 |
|
2 |
26 Feb 07 |
jari |
202 |
<br><p><font size = +1><b>DAM</b></font> - |
2 |
26 Feb 07 |
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203 |
<b>Discriminant Analysis Module</b> |
2 |
26 Feb 07 |
jari |
204 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12217913&query_hl=78&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
205 |
<br>Nguyen, D.V., D.M. Rocke. |
2 |
26 Feb 07 |
jari |
206 |
</a> |
2 |
26 Feb 07 |
jari |
207 |
Multi-class Cancer Classification via Partial Least Squares with Gene Expression Profiles. |
2 |
26 Feb 07 |
jari |
208 |
<i>Bioinformatics</i> 18(9):1216-1226, 2002 |
2 |
26 Feb 07 |
jari |
209 |
|
2 |
26 Feb 07 |
jari |
210 |
<br><p><font size = +1><b>TRN</b></font> - |
2 |
26 Feb 07 |
jari |
211 |
<b>Expression Terrain Maps</b> |
2 |
26 Feb 07 |
jari |
212 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11557892&query_hl=82&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
213 |
<br>Kim, S.K., J. Lund, M. Kiraly, K. Duke, M. Jiang, J.M. Stuart, A. Eizinger, |
2 |
26 Feb 07 |
jari |
214 |
B.N. Wylie, and G.S. Davidson (2001) |
2 |
26 Feb 07 |
jari |
215 |
</a> |
2 |
26 Feb 07 |
jari |
216 |
A Gene Expression Map for Caenorhabditis elegans. |
2 |
26 Feb 07 |
jari |
217 |
<i>Science</i> 293: 2087-2092. |
2 |
26 Feb 07 |
jari |
218 |
|
2 |
26 Feb 07 |
jari |
219 |
<br><p><font size = +1><b>EASE</b></font> - |
2 |
26 Feb 07 |
jari |
220 |
<b>Expression Analysis Systematic Explorer</b> |
2 |
26 Feb 07 |
jari |
221 |
<a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14519205&query_hl=84&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
222 |
<br>Hosack, D.A., G. Dennis Jr., B.T. Sherman, H.C. Lane, R.A. Lempicki. (2001) |
2 |
26 Feb 07 |
jari |
223 |
</a> |
2 |
26 Feb 07 |
jari |
224 |
Identifying biological themes within lists of genes with EASE. |
2 |
26 Feb 07 |
jari |
225 |
<i>Genome Biol.</i> 4:R70-R70.8, 2003. |
2 |
26 Feb 07 |
jari |
226 |
|
2 |
26 Feb 07 |
jari |
227 |
<br><p><font size = +1><b>TEASE</b></font> - |
2 |
26 Feb 07 |
jari |
228 |
<b>Tree EASE</b><p> |
2 |
26 Feb 07 |
jari |
229 |
Gottardo R, Raftery A.E, Yeung K.Y, and R.E. Bumgarner, Quality Control and Robust Estimation for cDNA Microarrays with Replicates, accepted for publication in The Journal of the American Statistical Association |
2 |
26 Feb 07 |
jari |
230 |
<br><p> |
2 |
26 Feb 07 |
jari |
231 |
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16542223&query_hl=84&itool=pubmed_docsum\"> |
2 |
26 Feb 07 |
jari |
232 |
Gottardo R, Raftery AE, Yee Yeung K, Bumgarner RE. 2006. Bayesian robust inference for differential gene expression in microarrays with multiple samples.</a> |
2 |
26 Feb 07 |
jari |
233 |
Biometrics. 62(1):10-8. |
2 |
26 Feb 07 |
jari |
234 |
|
2 |
26 Feb 07 |
jari |
235 |
<br><p><font size = +1><b>USC</b></font> - |
2 |
26 Feb 07 |
jari |
236 |
<b>Uncorrelated Shrunken Centroid</b><p> |
2 |
26 Feb 07 |
jari |
237 |
Yeung KY, Bumgarner RE. |
2 |
26 Feb 07 |
jari |
238 |
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14659020&query_hl=84&itool=pubmed_docsum">Multiclass classification of microarray data with repeated measurements: application to cancer.</a> |
2 |
26 Feb 07 |
jari |
239 |
Genome Biol. 2003;4(12):R83. Epub 2003 Nov 24. |
2 |
26 Feb 07 |
jari |
240 |
<br><p> |
2 |
26 Feb 07 |
jari |
241 |
Yeung KY, Bumgarner RE. |
2 |
26 Feb 07 |
jari |
242 |
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16420685&query_hl=84&itool=pubmed_docsum">Correction: Multiclass classification of microarray data with repeated measurements: application to cancer.</a> |
2 |
26 Feb 07 |
jari |
243 |
Genome Biol. 2005;6(13):405. Epub 2006 Jan 3. |
2 |
26 Feb 07 |
jari |
244 |
|
2 |
26 Feb 07 |
jari |
245 |
|
2 |
26 Feb 07 |
jari |
246 |
<br><p><font size = +1><b>CGH</b></font> - |
2 |
26 Feb 07 |
jari |
247 |
<b>Comparitive Genomic Hybridization</b><p> |
2 |
26 Feb 07 |
jari |
248 |
Margolin AA, Greshock J, Naylor TL, Mosse Y, Maris JM, Bignell G, Saeed AI, Quackenbush J, Weber BL. |
2 |
26 Feb 07 |
jari |
249 |
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15905276&query_hl=84&itool=pubmed_docsum">CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.</a> |
2 |
26 Feb 07 |
jari |
250 |
<i>Bioinformatics.</i> 2005 Aug 1;21(15):3308-11. |
2 |
26 Feb 07 |
jari |
251 |
|