mev-4.0.01/source/org/tigr/microarray/mev/cgh/CGHAlgorithms/NumberOfAlterations/CloneAlterations/CloneAmplifications2Copy.java

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2 26 Feb 07 jari 1 /*
2 26 Feb 07 jari 2  * MostDeleted2Copy.java
2 26 Feb 07 jari 3  *
2 26 Feb 07 jari 4  * Created on June 15, 2003, 9:47 PM
2 26 Feb 07 jari 5  */
2 26 Feb 07 jari 6
2 26 Feb 07 jari 7 package org.tigr.microarray.mev.cgh.CGHAlgorithms.NumberOfAlterations.CloneAlterations;
2 26 Feb 07 jari 8
2 26 Feb 07 jari 9 import org.tigr.microarray.mev.cluster.gui.IData;
2 26 Feb 07 jari 10
2 26 Feb 07 jari 11 //import org.abramson.microarray.cgh.CGHFcdObj.CGHMultipleArrayDataFcd;
2 26 Feb 07 jari 12 /**
2 26 Feb 07 jari 13  *
2 26 Feb 07 jari 14  * @author  Adam Margolin
2 26 Feb 07 jari 15  * @author Raktim Sinha
2 26 Feb 07 jari 16  */
2 26 Feb 07 jari 17
2 26 Feb 07 jari 18 public class CloneAmplifications2Copy extends CloneAlterations{
2 26 Feb 07 jari 19
2 26 Feb 07 jari 20     /** Creates a new instance of MostDeleted2Copy */
2 26 Feb 07 jari 21     public CloneAmplifications2Copy() {
2 26 Feb 07 jari 22         nodeName = "CloneAmplifications2Copy";
2 26 Feb 07 jari 23     }
2 26 Feb 07 jari 24
2 26 Feb 07 jari 25     protected boolean isAltered(int copyNumber) {
2 26 Feb 07 jari 26         if(copyNumber > 1 && copyNumber != IData.BAD_CLONE && copyNumber != IData.NO_COPY_CHANGE){
2 26 Feb 07 jari 27             return true;
2 26 Feb 07 jari 28         }else{
2 26 Feb 07 jari 29             return false;
2 26 Feb 07 jari 30         }
2 26 Feb 07 jari 31     }
2 26 Feb 07 jari 32 }

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