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mev-4.0.01/source/org/tigr/microarray/mev/cgh/CGHDataModel/CGHCircleViewerModel.java

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Rev	Date	Author	Line
2	26 Feb 07	jari	1	/*
2	26 Feb 07	jari	2	* CGHCircleViewerModel.java
2	26 Feb 07	jari	3	*
2	26 Feb 07	jari	4	* Created on October 10, 2002, 4:56 AM
2	26 Feb 07	jari	5	*/
2	26 Feb 07	jari	6
2	26 Feb 07	jari	7	package org.tigr.microarray.mev.cgh.CGHDataModel;
2	26 Feb 07	jari	8
2	26 Feb 07	jari	9	import java.awt.Color;
2	26 Feb 07	jari	10
2	26 Feb 07	jari	11	import org.tigr.microarray.mev.cgh.CGHDataObj.CGHClone;
2	26 Feb 07	jari	12	import org.tigr.microarray.mev.cluster.gui.IFramework;
2	26 Feb 07	jari	13
2	26 Feb 07	jari	14	/**
2	26 Feb 07	jari	15	*
2	26 Feb 07	jari	16	* @author Adam Margolin
2	26 Feb 07	jari	17	* @author Raktim Sinha
2	26 Feb 07	jari	18	*/
2	26 Feb 07	jari	19
2	26 Feb 07	jari	20	public class CGHCircleViewerModel extends CGHViewerDataModel implements ICircleViewerModel{
2	26 Feb 07	jari	21
2	26 Feb 07	jari	22	/** Creates a new instance of CGHCircleViewerModel */
2	26 Feb 07	jari	23	//public CGHCircleViewerModel(CGHMultipleArrayDataFcd fcd) {
2	26 Feb 07	jari	24	public CGHCircleViewerModel(IFramework framework) {
2	26 Feb 07	jari	25	super(framework);
2	26 Feb 07	jari	26	}
2	26 Feb 07	jari	27
2	26 Feb 07	jari	28	public Color getDataPointColor(int chrom, int bac, int experimentIndex){
2	26 Feb 07	jari	29	float value = data.getValue(experimentIndex, bac, chrom);
2	26 Feb 07	jari	30	return getColor(value);
2	26 Feb 07	jari	31	}
2	26 Feb 07	jari	32
2	26 Feb 07	jari	33	public int getNumChromosomes(){
2	26 Feb 07	jari	34	return data.getNumChromosomes();
2	26 Feb 07	jari	35	}
2	26 Feb 07	jari	36
2	26 Feb 07	jari	37	public int getNumDataPointsInChrom(int chrom){
2	26 Feb 07	jari	38	return data.getNumDataPointsInChrom(chrom);
2	26 Feb 07	jari	39	}
2	26 Feb 07	jari	40
2	26 Feb 07	jari	41
2	26 Feb 07	jari	42	public CGHClone getCloneAt(int cloneIndex, int chromosomeIndex) {
2	26 Feb 07	jari	43	return data.getCloneAt(cloneIndex, chromosomeIndex);
2	26 Feb 07	jari	44	}
2	26 Feb 07	jari	45
2	26 Feb 07	jari	46	}