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mev-4.0.01/source/org/tigr/microarray/mev/cgh/CGHDataModel/IPositionGraphDataModel.java

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Rev	Date	Author	Line
2	26 Feb 07	jari	1	/*
2	26 Feb 07	jari	2	* IPositionGraphDataModel.java
2	26 Feb 07	jari	3	*
2	26 Feb 07	jari	4	* Created on March 16, 2003, 11:40 PM
2	26 Feb 07	jari	5	*/
2	26 Feb 07	jari	6
2	26 Feb 07	jari	7	package org.tigr.microarray.mev.cgh.CGHDataModel;
2	26 Feb 07	jari	8
2	26 Feb 07	jari	9	import java.awt.Color;
2	26 Feb 07	jari	10
2	26 Feb 07	jari	11	import org.tigr.microarray.mev.cgh.CGHDataObj.CGHClone;
2	26 Feb 07	jari	12	import org.tigr.microarray.mev.cgh.CGHDataObj.FlankingRegion;
2	26 Feb 07	jari	13
2	26 Feb 07	jari	14	/**
2	26 Feb 07	jari	15	*
2	26 Feb 07	jari	16	* @author Adam Margolin
2	26 Feb 07	jari	17	* @author Raktim Sinha
2	26 Feb 07	jari	18	*/
2	26 Feb 07	jari	19
2	26 Feb 07	jari	20	public interface IPositionGraphDataModel {
2	26 Feb 07	jari	21
2	26 Feb 07	jari	22	public int getNumElements();
2	26 Feb 07	jari	23
2	26 Feb 07	jari	24	public int getNumExperiments();
2	26 Feb 07	jari	25
2	26 Feb 07	jari	26	public String getExperimentName(int index);
2	26 Feb 07	jari	27
2	26 Feb 07	jari	28	public int getMaxClonePosition();
2	26 Feb 07	jari	29
2	26 Feb 07	jari	30	public Color getDataPointColor(int cloneIndex, int experimentIndex);
2	26 Feb 07	jari	31
2	26 Feb 07	jari	32	public int getNumFlankingRegions(int expIndex);
2	26 Feb 07	jari	33
2	26 Feb 07	jari	34	public FlankingRegion getFlankingRegionAt(int expIndex, int flankingRegionIndex);
2	26 Feb 07	jari	35
2	26 Feb 07	jari	36	public int getStart(int index);
2	26 Feb 07	jari	37
2	26 Feb 07	jari	38	public int getStop(int index);
2	26 Feb 07	jari	39
2	26 Feb 07	jari	40	public int getChromosomeIndex();
2	26 Feb 07	jari	41
2	26 Feb 07	jari	42	public CGHClone getCloneAt(int index);
2	26 Feb 07	jari	43	}