svndigest - svndigest

Rev	Date	Author	Line
2	26 Feb 07	jari	1	<html>
2	26 Feb 07	jari	2	<body bgcolor = "#FFFFCC"><basefont face = "Arial">
2	26 Feb 07	jari	3	<h1>1-WAY ANOVA: One Way Analysis of Variance</h1><h2>Parameter Information</h2>
2	26 Feb 07	jari	4	<hr size = 10>
2	26 Feb 07	jari	5
2	26 Feb 07	jari	6	<h2> Number of Groups </h2>
2	26 Feb 07	jari	7	Specify the number of groups (>2) into which experiments will be placed. On hitting OK,
2	26 Feb 07	jari	8	an input screen for the specified umber of groups will be created. Once that is done,
2	26 Feb 07	jari	9	selection buttons allow the assignment of experiments to the appropriate classes.
2	26 Feb 07	jari	10	Groupings can be saved, loaded, and reset using the buttons below the group selection
2	26 Feb 07	jari	11	controls.
2	26 Feb 07	jari	12	<br>
2	26 Feb 07	jari	13	<h2>P-value / false discovery parameters</h2>
2	26 Feb 07	jari	14	P-values are currently computed only from the F-distribution. Genes with a p-value less
2	26 Feb 07	jari	15	than the alpha or critical p-value are considered significant. When using false discovery
2	26 Feb 07	jari	16	options, the signficant gene list contains no more than the number or proportion of specified
2	26 Feb 07	jari	17	false significant genes, at a confidence of [1 - alpha]
2	26 Feb 07	jari	18	<br>
2	26 Feb 07	jari	19	<h2>Hierarchical Clustering </h2>
2	26 Feb 07	jari	20	This check box specifies whether to perform hierarchical clustering on the elements in
2	26 Feb 07	jari	21	each cluster created
2	26 Feb 07	jari	22	<br>
2	26 Feb 07	jari	23	</basefont>
2	26 Feb 07	jari	24	</body>
2	26 Feb 07	jari	25	</html>