svndigest - svndigest

Rev	Date	Author	Line
2	26 Feb 07	jari	1	<html>
2	26 Feb 07	jari	2	<body bgcolor = "#FFFFCC"><basefont face = "Arial">
2	26 Feb 07	jari	3	<h1>TRN: Terrain Maps</h1> <h2>Parameter Information</h2>
2	26 Feb 07	jari	4	<hr size = 10>
2	26 Feb 07	jari	5
2	26 Feb 07	jari	6	<h2> Sample Selection (genes/experiments)</h2>
2	26 Feb 07	jari	7	The sample selection option indicates whether to perform the analysis
2	26 Feb 07	jari	8	on genes or experiments.
2	26 Feb 07	jari	9	<br>
2	26 Feb 07	jari	10	<h2> Neighbors </h2>
2	26 Feb 07	jari	11	Each element is first mapped to an x-y coordinate on the map based on
2	26 Feb 07	jari	12	it's similarity to a group of its most closely related neighbors. The mapping
2	26 Feb 07	jari	13	to the x-y coordinate system is based on degree of similarity. (The method is
2	26 Feb 07	jari	14	described in some detail in the reference for TRN.) The entered number determines
2	26 Feb 07	jari	15	the number of nearest neighbors that will influence an element's position
2	26 Feb 07	jari	16	in the x-y grid.
2	26 Feb 07	jari	17	<br><br>
2	26 Feb 07	jari	18	The z dimension represents the density of elements within a given area.
2	26 Feb 07	jari	19	<br>
2	26 Feb 07	jari	20	</basefont>
2	26 Feb 07	jari	21	</body>
2	26 Feb 07	jari	22	</html>