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/* |
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Copyright @ 1999-2004, The Institute for Genomic Research (TIGR). |
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All rights reserved. |
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*/ |
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/* |
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* NewickFileOutputDialog.java |
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* |
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* Created on January 7, 2005, 10:37 AM |
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*/ |
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package org.tigr.microarray.mev.cluster.gui.impl.hcl; |
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import java.awt.Dimension; |
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import java.awt.Frame; |
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import java.awt.GridBagConstraints; |
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import java.awt.GridBagLayout; |
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import java.awt.Insets; |
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import java.awt.Toolkit; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.WindowEvent; |
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import java.io.File; |
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|
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import javax.swing.JButton; |
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import javax.swing.JComboBox; |
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import javax.swing.JFileChooser; |
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import javax.swing.JLabel; |
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import javax.swing.JOptionPane; |
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import javax.swing.JTextField; |
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|
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import org.tigr.microarray.mev.TMEV; |
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import org.tigr.microarray.mev.cluster.gui.impl.dialogs.AlgorithmDialog; |
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import org.tigr.microarray.mev.cluster.gui.impl.dialogs.DialogListener; |
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import org.tigr.microarray.mev.cluster.gui.impl.dialogs.ParameterPanel; |
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import org.tigr.microarray.mev.cluster.gui.impl.dialogs.dialogHelpUtil.HelpWindow; |
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/** |
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* |
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* @author braisted |
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*/ |
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public class NewickFileOutputDialog extends AlgorithmDialog { |
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|
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private int result = JOptionPane.CANCEL_OPTION; |
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private boolean isGeneTree = false; |
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|
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private JComboBox annBox; |
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private JTextField fileField; |
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//private JCheckBox zeroRootBox; |
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|
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/** Creates a new instance of NewickFileOutputDialog */ |
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public NewickFileOutputDialog(Frame parent, String[] annotationKeys, int orientation) { |
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super(parent, "Newick File Output Dialog", true); |
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|
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if(orientation == HCLTree.HORIZONTAL) |
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isGeneTree = true; |
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|
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JLabel annSelectionLabel; |
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if(isGeneTree) { |
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annSelectionLabel = new JLabel("Select a Gene Label:"); |
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} else { |
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annSelectionLabel = new JLabel("Select a Sample Label:"); |
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} |
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|
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annBox = new JComboBox(annotationKeys); |
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annBox.setSelectedIndex(0); |
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|
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//zeroRootBox = new JCheckBox("Include 0.0 Height Root", false); |
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//zeroRootBox.setOpaque(false); |
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//zeroRootBox.setFocusPainted(false); |
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|
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JLabel fileLabel = new JLabel("Output File:"); |
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fileField = new JTextField(50); |
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fileField.setMargin(new Insets(0,3,0,3)); |
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fileField.setHorizontalAlignment(JTextField.TRAILING); |
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fileField.setText( TMEV.getFile("data").getAbsolutePath() + System.getProperty("file.separator") + "newick_output.txt"); |
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|
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JButton browseButton = new JButton("Select Output File"); |
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browseButton.setActionCommand("browse-command"); |
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browseButton.setFocusPainted(false); |
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|
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ParameterPanel panel = new ParameterPanel("Output Parameters"); |
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panel.setLayout(new GridBagLayout()); |
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|
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panel.add(annSelectionLabel, new GridBagConstraints(0,0,1,1,0,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(10,20,5,0), 0, 0)); |
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panel.add(annBox, new GridBagConstraints(0,1,1,1,0,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0,20,30,0), 0, 0)); |
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//panel.add(zeroRootBox, new GridBagConstraints(0,2,1,1,0,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0,20,30,0), 0, 0)); |
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panel.add(fileLabel, new GridBagConstraints(0,2,1,1,0,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0,20,5,0), 0, 0)); |
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panel.add(fileField, new GridBagConstraints(0,3,1,1,1,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0,20,20,0), 0, 0)); |
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panel.add(browseButton, new GridBagConstraints(1,3,1,1,0,0,GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0,5,20,20), 0, 0)); |
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|
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addContent(panel); |
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Listener listener = new Listener(); |
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browseButton.addActionListener(listener); |
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setActionListeners(listener); |
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setSize(470, 300); |
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} |
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|
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/** |
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* Shows the dialog. |
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*/ |
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public int showModal() { |
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Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize(); |
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setLocation((screenSize.width - getSize().width)/2, (screenSize.height - getSize().height)/2); |
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show(); |
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return result; |
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} |
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|
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private boolean validateOutputFile() { |
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File outFile = new File(this.fileField.getText()); |
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File parent = outFile.getParentFile(); |
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return (parent.exists() && parent.isDirectory()); |
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} |
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|
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private void resetControls() { |
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this.annBox.setSelectedIndex(0); |
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//this.zeroRootBox.setSelected(false); |
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this.fileField.setText(TMEV.getFile("data").getAbsolutePath() + System.getProperty("file.separator") + "newick_output.txt"); |
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} |
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|
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public File getOutputFile() { |
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return new File(this.fileField.getText()); |
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} |
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|
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public String getAnnotationKey() { |
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return (String)this.annBox.getSelectedItem(); |
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} |
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|
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public static void main(String [] args) { |
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String [] names = new String[3]; |
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names[0] = "TC"; |
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names[1] = "GenBank"; |
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names[2] = "Putative Role (Guess)"; |
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NewickFileOutputDialog d = new NewickFileOutputDialog(new Frame(), names, HCLTree.HORIZONTAL); |
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d.showModal(); |
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} |
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|
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/** |
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* The class to listen to the dialog and check boxes items events. |
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*/ |
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private class Listener extends DialogListener { |
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|
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public void actionPerformed(ActionEvent e) { |
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String command = e.getActionCommand(); |
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if (command.equals("ok-command")) { |
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//validate file |
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if(!validateOutputFile()) { |
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JOptionPane.showMessageDialog(NewickFileOutputDialog.this, "The directory specified for file output does not exist.<BR>Please select again.", "Newick Output File Error", JOptionPane.WARNING_MESSAGE); |
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return; |
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} |
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result = JOptionPane.OK_OPTION; |
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dispose(); |
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} else if (command.equals("cancel-command")) { |
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result = JOptionPane.CANCEL_OPTION; |
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dispose(); |
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} |
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else if (command.equals("reset-command")){ |
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resetControls(); |
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result = JOptionPane.CANCEL_OPTION; |
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return; |
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} |
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else if (command.equals("info-command")){ |
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HelpWindow hw = new HelpWindow(NewickFileOutputDialog.this, "Newick File Output Dialog"); |
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result = JOptionPane.CANCEL_OPTION; |
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if(hw.getWindowContent()){ |
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hw.setSize(450,600); |
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hw.setLocation(); |
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hw.show(); |
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return; |
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} |
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else { |
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hw.setVisible(false); |
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hw.dispose(); |
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return; |
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} |
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} |
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else if (command.equals("browse-command")) { |
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String dataPath = TMEV.getDataPath(); |
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File fileLoc = TMEV.getFile("data/"); |
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// if the data path is null go to default, if not null and not exist then to to default |
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// else use the dataPath |
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if(dataPath != null) { |
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fileLoc = new File(dataPath); |
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if(!fileLoc.exists()) { |
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fileLoc = TMEV.getFile("data/"); |
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} |
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} |
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JFileChooser chooser = new JFileChooser(fileLoc); |
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chooser.setFileSelectionMode(javax.swing.DefaultListSelectionModel.SINGLE_SELECTION); |
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if(chooser.showSaveDialog(NewickFileOutputDialog.this) == JFileChooser.APPROVE_OPTION) { |
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fileField.setText(chooser.getSelectedFile().getAbsolutePath()); |
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NewickFileOutputDialog.this.validate(); |
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//NewickFileOutputDialog.this.pack(); |
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} |
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return; |
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} |
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dispose(); |
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} |
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|
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public void windowClosing(WindowEvent e) { |
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result = JOptionPane.CLOSED_OPTION; |
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dispose(); |
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} |
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} |
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} |