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/* |
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Copyright @ 1999-2003, The Institute for Genomic Research (TIGR). |
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All rights reserved. |
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*/ |
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/* |
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* $RCSfile: SOMCentroidViewer.java,v $ |
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* $Revision: 1.6 $ |
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* $Date: 2006/05/02 16:57:04 $ |
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* $Author: eleanorahowe $ |
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* $State: Exp $ |
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*/ |
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package org.tigr.microarray.mev.cluster.gui.impl.som; |
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|
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import java.awt.Color; |
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import java.awt.Frame; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import java.awt.event.MouseAdapter; |
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import java.awt.event.MouseEvent; |
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|
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import javax.swing.JColorChooser; |
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import javax.swing.JOptionPane; |
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import javax.swing.JPopupMenu; |
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|
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import org.tigr.microarray.mev.cluster.gui.Experiment; |
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import org.tigr.microarray.mev.cluster.gui.helpers.CentroidViewer; |
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import org.tigr.microarray.mev.cluster.gui.helpers.ExperimentUtil; |
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|
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public class SOMCentroidViewer extends CentroidViewer { |
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|
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private JPopupMenu popup; |
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|
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/** |
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* Construct a <code>KMCCentroidViewer</code> with specified experiment |
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* and clusters. |
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*/ |
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public SOMCentroidViewer(Experiment experiment, int[][] clusters) { |
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super(experiment, clusters); |
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Listener listener = new Listener(); |
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this.popup = createJPopupMenu(listener); |
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getContentComponent().addMouseListener(listener); |
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} |
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/** |
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* @inheritDoc |
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* |
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*/ |
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public SOMCentroidViewer(Experiment e, int[][] clusters, float[][] variances, float[][] means, float[][] codes) { |
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super(e, clusters, variances, means, codes); |
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} |
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|
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/** |
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* Creates a popup menu. |
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*/ |
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private JPopupMenu createJPopupMenu(Listener listener) { |
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JPopupMenu popup = new JPopupMenu(); |
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addMenuItems(popup, listener); |
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return popup; |
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} |
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|
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|
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/** |
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* Saves all clusters. |
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*/ |
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private void onSaveClusters() { |
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Frame frame = JOptionPane.getFrameForComponent(getContentComponent()); |
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try { |
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ExperimentUtil.saveExperiment(frame, getExperiment(), getData(), getClusters()); |
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} catch (Exception e) { |
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JOptionPane.showMessageDialog(frame, "Can not save clusters!", e.toString(), JOptionPane.ERROR_MESSAGE); |
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e.printStackTrace(); |
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} |
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} |
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|
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/** |
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* Save the viewer cluster. |
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*/ |
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private void onSaveCluster() { |
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Frame frame = JOptionPane.getFrameForComponent(getContentComponent()); |
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try { |
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ExperimentUtil.saveExperiment(frame, getExperiment(), getData(), getCluster()); |
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} catch (Exception e) { |
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JOptionPane.showMessageDialog(frame, "Can not save cluster!", e.toString(), JOptionPane.ERROR_MESSAGE); |
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e.printStackTrace(); |
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} |
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} |
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|
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/** |
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* Sets a public color. |
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*/ |
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private void onSetColor() { |
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Frame frame = JOptionPane.getFrameForComponent(getContentComponent()); |
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Color newColor = JColorChooser.showDialog(frame, "Choose color", DEF_CLUSTER_COLOR); |
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if (newColor != null) { |
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setClusterColor(newColor); |
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} |
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} |
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|
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/** |
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* Removes a public color. |
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*/ |
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private void onSetDefaultColor() { |
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setClusterColor(null); |
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} |
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|
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/** |
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* The class to listen to mouse and action events. |
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*/ |
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private class Listener extends MouseAdapter implements ActionListener { |
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|
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public void actionPerformed(ActionEvent e) { |
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String command = e.getActionCommand(); |
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if (command.equals(SAVE_CLUSTER_CMD)) { |
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onSaveCluster(); |
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} else if (command.equals(SAVE_ALL_CLUSTERS_CMD)) { |
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onSaveClusters(); |
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} else if (command.equals(SET_DEF_COLOR_CMD)) { |
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onSetDefaultColor(); |
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} else if(command.equals(SET_Y_TO_EXPERIMENT_MAX_CMD)){ |
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yRangeOption = CentroidViewer.USE_EXPERIMENT_MAX; |
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setClusterMaxMenuItem.setEnabled(true); |
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setOverallMaxMenuItem.setEnabled(false); |
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repaint(); |
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} else if(command.equals(SET_Y_TO_CLUSTER_MAX_CMD)){ |
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yRangeOption = CentroidViewer.USE_CLUSTER_MAX; |
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setClusterMaxMenuItem.setEnabled(false); |
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setOverallMaxMenuItem.setEnabled(true); |
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repaint(); |
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} else if (command.equals(STORE_CLUSTER_CMD)) { |
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storeCluster(); |
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} else if(command.equals(LAUNCH_NEW_SESSION_CMD)){ |
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launchNewSession(); |
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} else if(command.equals(TOGGLE_REF_LINE_CMD)){ |
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showRefLine = !showRefLine; |
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repaint(); |
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} |
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} |
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|
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public void mouseReleased(MouseEvent event) { |
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maybeShowPopup(event); |
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} |
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|
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public void mousePressed(MouseEvent event) { |
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maybeShowPopup(event); |
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} |
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|
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private void maybeShowPopup(MouseEvent e) { |
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if (!e.isPopupTrigger() || getCluster() == null || getCluster().length == 0) { |
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return; |
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} |
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popup.show(e.getComponent(), e.getX(), e.getY()); |
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} |
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} |
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|
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} |