4247 |
22 Nov 16 |
olle |
1 |
<%@ page |
4247 |
22 Nov 16 |
olle |
2 |
pageEncoding="UTF-8" |
4247 |
22 Nov 16 |
olle |
3 |
session="false" |
4247 |
22 Nov 16 |
olle |
4 |
import="net.sf.basedb.core.User" |
4247 |
22 Nov 16 |
olle |
5 |
import="net.sf.basedb.core.BioPlate" |
4247 |
22 Nov 16 |
olle |
6 |
import="net.sf.basedb.core.DbControl" |
4247 |
22 Nov 16 |
olle |
7 |
import="net.sf.basedb.core.Item" |
4247 |
22 Nov 16 |
olle |
8 |
import="net.sf.basedb.core.ItemContext" |
4247 |
22 Nov 16 |
olle |
9 |
import="net.sf.basedb.core.SessionControl" |
4247 |
22 Nov 16 |
olle |
10 |
import="net.sf.basedb.core.Application" |
4247 |
22 Nov 16 |
olle |
11 |
import="net.sf.basedb.clients.web.Base" |
4247 |
22 Nov 16 |
olle |
12 |
import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
4247 |
22 Nov 16 |
olle |
13 |
import="net.sf.basedb.util.Values" |
4247 |
22 Nov 16 |
olle |
14 |
import="java.util.List" |
4247 |
22 Nov 16 |
olle |
15 |
%> |
4247 |
22 Nov 16 |
olle |
16 |
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
4247 |
22 Nov 16 |
olle |
17 |
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
4247 |
22 Nov 16 |
olle |
18 |
<% |
4247 |
22 Nov 16 |
olle |
19 |
final SessionControl sc = Base.getExistingSessionControl(request, true); |
4247 |
22 Nov 16 |
olle |
20 |
final String ID = sc.getId(); |
4247 |
22 Nov 16 |
olle |
21 |
final float scale = Base.getScale(sc); |
4247 |
22 Nov 16 |
olle |
22 |
final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.meludi"); |
4247 |
22 Nov 16 |
olle |
23 |
DbControl dc = null; |
4247 |
22 Nov 16 |
olle |
24 |
try |
4247 |
22 Nov 16 |
olle |
25 |
{ |
4247 |
22 Nov 16 |
olle |
26 |
dc = sc.newDbControl(); |
4247 |
22 Nov 16 |
olle |
27 |
final User user = User.getById(dc, sc.getLoggedInUserId()); |
4247 |
22 Nov 16 |
olle |
28 |
%> |
4247 |
22 Nov 16 |
olle |
29 |
<base:page type="default" > |
4247 |
22 Nov 16 |
olle |
30 |
<base:head |
4247 |
22 Nov 16 |
olle |
31 |
scripts="~../meludi-2.js,~specimen_new_extract_items.js" |
4247 |
22 Nov 16 |
olle |
32 |
styles="path.css,~../css/meludi-2.css" |
4247 |
22 Nov 16 |
olle |
33 |
/> |
4247 |
22 Nov 16 |
olle |
34 |
<base:body> |
4247 |
22 Nov 16 |
olle |
35 |
|
4247 |
22 Nov 16 |
olle |
36 |
<p:path><p:pathelement |
4247 |
22 Nov 16 |
olle |
37 |
title="" href="<%="../index.jsp?ID="+ID%>" |
4247 |
22 Nov 16 |
olle |
38 |
/><p:pathelement title="Create extract items for extra specimen" |
4247 |
22 Nov 16 |
olle |
39 |
/></p:path> |
4247 |
22 Nov 16 |
olle |
40 |
|
4247 |
22 Nov 16 |
olle |
41 |
<div class="content"> |
4247 |
22 Nov 16 |
olle |
42 |
|
4247 |
22 Nov 16 |
olle |
43 |
<form name="meludi" id="wizard" class="wizard"> |
4247 |
22 Nov 16 |
olle |
44 |
|
4247 |
22 Nov 16 |
olle |
45 |
<div class="step" id="step-1"> |
4247 |
22 Nov 16 |
olle |
46 |
<div class="step-no">1</div> |
4247 |
22 Nov 16 |
olle |
47 |
<div class="step-title">Select extra specimen[s] to create extract items for</div> |
4247 |
22 Nov 16 |
olle |
48 |
<div class="step-content"> |
4247 |
22 Nov 16 |
olle |
49 |
|
4247 |
22 Nov 16 |
olle |
50 |
<table class="step-form"> |
4247 |
22 Nov 16 |
olle |
51 |
<tr class="align-top"> |
4247 |
22 Nov 16 |
olle |
52 |
<td class="prompt">Specimens</td> |
4247 |
22 Nov 16 |
olle |
53 |
<td class="input"> |
4247 |
22 Nov 16 |
olle |
54 |
<select name="extractSourceItems" id="extractSourceItems" multiple size="30"></select> |
4247 |
22 Nov 16 |
olle |
55 |
</td> |
4247 |
22 Nov 16 |
olle |
56 |
<td class="status" id="extractSourceItems.status"></td> |
4247 |
22 Nov 16 |
olle |
57 |
<td class="help"> |
4247 |
22 Nov 16 |
olle |
58 |
<span id="extractSourceItems.message" class="message" ></span> |
4247 |
22 Nov 16 |
olle |
59 |
Select the unprocessed extra specimens, for which you want extract items |
4247 |
22 Nov 16 |
olle |
60 |
to be created, and reserved places in storage boxes. This will allow |
4247 |
22 Nov 16 |
olle |
61 |
the selected specimens to appear in the extract source item menu |
4247 |
22 Nov 16 |
olle |
62 |
for wizard "Lab tracking protocol for FFPE extraction". |
4247 |
22 Nov 16 |
olle |
63 |
The list contains unprocessed specimen without RNA/DNA items. |
4247 |
22 Nov 16 |
olle |
64 |
</td> |
4247 |
22 Nov 16 |
olle |
65 |
</tr> |
4247 |
22 Nov 16 |
olle |
66 |
</table> |
4247 |
22 Nov 16 |
olle |
67 |
</div> |
4247 |
22 Nov 16 |
olle |
68 |
</div> |
4247 |
22 Nov 16 |
olle |
69 |
|
4247 |
22 Nov 16 |
olle |
70 |
<div class="step" id="step-2"> |
4247 |
22 Nov 16 |
olle |
71 |
<div class="step-no">2</div> |
4247 |
22 Nov 16 |
olle |
72 |
<div class="step-title">Enter tube information</div> |
4247 |
22 Nov 16 |
olle |
73 |
<div class="step-content"> |
4247 |
22 Nov 16 |
olle |
74 |
<table id="specimen-tubes" class="step-form"> |
4247 |
22 Nov 16 |
olle |
75 |
</table> |
4247 |
22 Nov 16 |
olle |
76 |
</div> |
4247 |
22 Nov 16 |
olle |
77 |
</div> |
4247 |
22 Nov 16 |
olle |
78 |
|
4247 |
22 Nov 16 |
olle |
79 |
<div id="wizard-status"></div> |
4247 |
22 Nov 16 |
olle |
80 |
|
4247 |
22 Nov 16 |
olle |
81 |
<table class="navigation" id="navigation"> |
4247 |
22 Nov 16 |
olle |
82 |
<tr> |
4247 |
22 Nov 16 |
olle |
83 |
<td><base:button id="gocancel" title="Cancel" /></td> |
4247 |
22 Nov 16 |
olle |
84 |
<td><base:button id="gonext" title="Next" image="<%=home+"/images/gonext.png"%>" /></td> |
4247 |
22 Nov 16 |
olle |
85 |
<td><base:button id="goregister" title="Register" image="<%=home+"/images/import.png"%>" /></td> |
4247 |
22 Nov 16 |
olle |
86 |
<td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td> |
4247 |
22 Nov 16 |
olle |
87 |
<td><base:button id="gostop" title="Stop" image="cancel.png" /></td> |
4247 |
22 Nov 16 |
olle |
88 |
<td id="gonext-message" class="message"></td> |
4247 |
22 Nov 16 |
olle |
89 |
</tr> |
4247 |
22 Nov 16 |
olle |
90 |
</table> |
4247 |
22 Nov 16 |
olle |
91 |
|
4247 |
22 Nov 16 |
olle |
92 |
|
4247 |
22 Nov 16 |
olle |
93 |
</form> |
4247 |
22 Nov 16 |
olle |
94 |
</div> |
4247 |
22 Nov 16 |
olle |
95 |
|
4247 |
22 Nov 16 |
olle |
96 |
</base:body> |
4247 |
22 Nov 16 |
olle |
97 |
</base:page> |
4247 |
22 Nov 16 |
olle |
98 |
<% |
4247 |
22 Nov 16 |
olle |
99 |
} |
4247 |
22 Nov 16 |
olle |
100 |
finally |
4247 |
22 Nov 16 |
olle |
101 |
{ |
4247 |
22 Nov 16 |
olle |
102 |
if (dc != null) dc.close(); |
4247 |
22 Nov 16 |
olle |
103 |
} |
4247 |
22 Nov 16 |
olle |
104 |
%> |