extensions/net.sf.basedb.reggie/trunk/resources/analysis/report.jsp

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3492 18 Sep 15 nicklas 1 <%@ page
3492 18 Sep 15 nicklas 2   pageEncoding="UTF-8"
3492 18 Sep 15 nicklas 3   session="false"
3492 18 Sep 15 nicklas 4   import="net.sf.basedb.core.User"
3492 18 Sep 15 nicklas 5   import="net.sf.basedb.core.DbControl"
3492 18 Sep 15 nicklas 6   import="net.sf.basedb.core.SessionControl"
3492 18 Sep 15 nicklas 7   import="net.sf.basedb.core.Application"
5737 20 Nov 19 nicklas 8   import="net.sf.basedb.core.PermissionDeniedException"
5737 20 Nov 19 nicklas 9   import="net.sf.basedb.clients.web.Base"
3492 18 Sep 15 nicklas 10   import="net.sf.basedb.clients.web.util.HTML"  
3492 18 Sep 15 nicklas 11   import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
3492 18 Sep 15 nicklas 12 %>
3492 18 Sep 15 nicklas 13 <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
3492 18 Sep 15 nicklas 14 <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
3492 18 Sep 15 nicklas 15 <%
3976 26 May 16 nicklas 16 final SessionControl sc = Base.getExistingSessionControl(request, "net.sf.basedb.reggie", true);
3492 18 Sep 15 nicklas 17 final String ID = sc.getId();
3492 18 Sep 15 nicklas 18 final float scale = Base.getScale(sc);
3492 18 Sep 15 nicklas 19 final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
3492 18 Sep 15 nicklas 20 final String report = request.getParameter("report");
3492 18 Sep 15 nicklas 21
3492 18 Sep 15 nicklas 22 DbControl dc = null;
3492 18 Sep 15 nicklas 23 try
3492 18 Sep 15 nicklas 24 {
3492 18 Sep 15 nicklas 25   dc = sc.newDbControl();
3492 18 Sep 15 nicklas 26   final User user = User.getById(dc, sc.getLoggedInUserId());
3492 18 Sep 15 nicklas 27 %>
3492 18 Sep 15 nicklas 28 <base:page type="default" >
3492 18 Sep 15 nicklas 29 <base:head 
3492 18 Sep 15 nicklas 30   scripts="~../reggie-2.js,~report.js" 
3492 18 Sep 15 nicklas 31   styles="path.css,~../css/reggie-2.css"
3492 18 Sep 15 nicklas 32 />
3492 18 Sep 15 nicklas 33 <base:body>
3492 18 Sep 15 nicklas 34
3492 18 Sep 15 nicklas 35   <p:path><p:pathelement 
3492 18 Sep 15 nicklas 36     title="Reggie" href="<%="../index.jsp?ID="+ID%>" 
3513 24 Sep 15 nicklas 37     /><p:pathelement id="reportName" title="<%=HTML.encodeTags(report)%>" 
3492 18 Sep 15 nicklas 38     /></p:path>
3492 18 Sep 15 nicklas 39
3492 18 Sep 15 nicklas 40   <div id="page-data" class="datacontainer"
3492 18 Sep 15 nicklas 41     data-report="<%=HTML.encodeTags(report)%>"
3492 18 Sep 15 nicklas 42   ></div>
3492 18 Sep 15 nicklas 43
3492 18 Sep 15 nicklas 44   <div class="content">
3492 18 Sep 15 nicklas 45   <form name="reggie" id="wizard" class="wizard">
3492 18 Sep 15 nicklas 46   
3492 18 Sep 15 nicklas 47   <div class="step" id="step-1">
3492 18 Sep 15 nicklas 48     <div class="step-no">1</div>
3492 18 Sep 15 nicklas 49     <div class="step-title">Select raw bioassays</div>
3492 18 Sep 15 nicklas 50     <div class="step-content">
3492 18 Sep 15 nicklas 51       
3492 18 Sep 15 nicklas 52       <table class="step-form">
3492 18 Sep 15 nicklas 53       <tr class="align-top">
3492 18 Sep 15 nicklas 54         <td class="prompt">Raw bioassays</td>
3492 18 Sep 15 nicklas 55         <td class="input">
3768 24 Feb 16 nicklas 56           <select class="required yellow-label-support" multiple size="30"
3492 18 Sep 15 nicklas 57             name="rawBioAssays" id="rawBioAssays"></select>
3492 18 Sep 15 nicklas 58             
3492 18 Sep 15 nicklas 59           <base:buttongroup style="margin-top: 0.5em;">
3492 18 Sep 15 nicklas 60             <base:button title="Select manually&hellip;" id="btnSelectRawBioAssays" />
3492 18 Sep 15 nicklas 61           </base:buttongroup>
3492 18 Sep 15 nicklas 62         </td>
3492 18 Sep 15 nicklas 63         <td class="status" id="rawBioAssays.status"></td>
3492 18 Sep 15 nicklas 64         <td class="help"><span id="rawBioAssays.message" class="message"></span>
3492 18 Sep 15 nicklas 65           Select the raw bioassays to generate a report for.
6023 26 Oct 20 nicklas 66           The list contains all confirmed raw bioassays in the item list for the
6023 26 Oct 20 nicklas 67           specifed report (Gene report list, Pilot report list or SCAN-B report list).
3492 18 Sep 15 nicklas 68         </td>
3492 18 Sep 15 nicklas 69       </tr>
3616 23 Nov 15 nicklas 70       <tr>
3616 23 Nov 15 nicklas 71         <td class="subprompt">Software</td>
3616 23 Nov 15 nicklas 72         <td class="input">
3616 23 Nov 15 nicklas 73           <select name="reportSoftware" id="reportSoftware"></select>
3616 23 Nov 15 nicklas 74         </td>
3616 23 Nov 15 nicklas 75         <td class="status" id="reportSoftware.status"></td>
3616 23 Nov 15 nicklas 76         <td class="help">
3616 23 Nov 15 nicklas 77           <span id="reportSoftware.message" class="message"></span>
3616 23 Nov 15 nicklas 78           Select the software to use for creating the report.
3616 23 Nov 15 nicklas 79         </td>
3616 23 Nov 15 nicklas 80       </tr>
3616 23 Nov 15 nicklas 81       <tbody class="info-section">
3616 23 Nov 15 nicklas 82         <tr>
3616 23 Nov 15 nicklas 83           <td class="subprompt">Parameter set</td>
3616 23 Nov 15 nicklas 84           <td class="info" colspan="2">
3616 23 Nov 15 nicklas 85             <span id="reportSoftware.parameterSet"></span>
3616 23 Nov 15 nicklas 86             <div id="reportSoftware.description" class="item-description"></div>
3616 23 Nov 15 nicklas 87           </td>
3616 23 Nov 15 nicklas 88           <td class="help">
3616 23 Nov 15 nicklas 89             Parameters are configured in 
3616 23 Nov 15 nicklas 90             <span id="configSection">&lt;gene-report&gt; or &lt;pilot-report&gt;</span>
3616 23 Nov 15 nicklas 91             section in reggie-config.xml.
3616 23 Nov 15 nicklas 92           </td>
3616 23 Nov 15 nicklas 93         </tr>
3616 23 Nov 15 nicklas 94       </tbody>
3492 18 Sep 15 nicklas 95       </table>
3492 18 Sep 15 nicklas 96     </div>
3492 18 Sep 15 nicklas 97   </div>
3492 18 Sep 15 nicklas 98       
3492 18 Sep 15 nicklas 99   <div id="wizard-status"></div>
3492 18 Sep 15 nicklas 100
3492 18 Sep 15 nicklas 101   <table class="navigation" id="navigation">
3492 18 Sep 15 nicklas 102   <tr>
3492 18 Sep 15 nicklas 103     <td><base:button id="gocancel" title="Cancel" /></td>
3492 18 Sep 15 nicklas 104     <td><base:button id="gonext" title="Next" image="<%=home+"/images/gonext.png"%>" /></td>
3492 18 Sep 15 nicklas 105     <td><base:button id="goregister" title="Register" image="<%=home+"/images/import.png"%>"  /></td>
3492 18 Sep 15 nicklas 106     <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td>
3492 18 Sep 15 nicklas 107     <td id="gonext-message" class="message"></td>
3492 18 Sep 15 nicklas 108   </tr>
3492 18 Sep 15 nicklas 109   </table>
3492 18 Sep 15 nicklas 110
3492 18 Sep 15 nicklas 111   </form>
3492 18 Sep 15 nicklas 112   </div>
3492 18 Sep 15 nicklas 113   
3492 18 Sep 15 nicklas 114 </base:body>
3492 18 Sep 15 nicklas 115 </base:page>
3492 18 Sep 15 nicklas 116 <%
3492 18 Sep 15 nicklas 117 }
3492 18 Sep 15 nicklas 118 finally
3492 18 Sep 15 nicklas 119 {
3492 18 Sep 15 nicklas 120   if (dc != null) dc.close();
3492 18 Sep 15 nicklas 121 }
3492 18 Sep 15 nicklas 122 %>

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