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<%@ page |
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pageEncoding="UTF-8" |
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session="false" |
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import="net.sf.basedb.core.User" |
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import="net.sf.basedb.core.DbControl" |
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import="net.sf.basedb.core.SessionControl" |
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import="net.sf.basedb.core.Application" |
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import="net.sf.basedb.core.DerivedBioAssay" |
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import="net.sf.basedb.util.Values" |
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import="net.sf.basedb.clients.web.Base" |
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import="net.sf.basedb.clients.web.util.HTML" |
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import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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%> |
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<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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<% |
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final SessionControl sc = Base.getExistingSessionControl(request, "net.sf.basedb.reggie", true); |
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final String ID = sc.getId(); |
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final float scale = Base.getScale(sc); |
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final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie"); |
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final int tumorId = Values.getInt(request.getParameter("tumorId")); |
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final int normalId = Values.getInt(request.getParameter("normalId")); |
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|
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DbControl dc = null; |
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try |
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{ |
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dc = sc.newDbControl(); |
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final User user = User.getById(dc, sc.getLoggedInUserId()); |
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|
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DerivedBioAssay tumor = DerivedBioAssay.getById(dc, tumorId); |
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DerivedBioAssay normal = DerivedBioAssay.getById(dc, normalId); |
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|
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%> |
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<base:page type="popup" title="Existing ASCAT results"> |
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<base:head |
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scripts="~../reggie-2.js,~view_existing_ascat_results.js" |
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styles="~../css/reggie-2.css" |
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> |
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<style> |
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tr.highlight |
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{ |
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border-top-width: 1px; |
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border-top-style: dotted; |
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} |
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|
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#ascatTable |
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{ |
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width: 100%; |
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border-collapse: collapse; |
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border-bottom-width: 1px; |
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} |
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|
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#ascatTable thead |
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{ |
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border-bottom-width: 1px; |
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} |
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|
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#ascatTable td |
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{ |
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text-align: center; |
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min-width: 4.5em; |
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} |
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|
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#ascatTable tbody td |
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{ |
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padding-top: 1px; |
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padding-bottom: 1px; |
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} |
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|
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#ascatTable .italic |
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{ |
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font-style: italic; |
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} |
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|
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#ascatTable .icon-col |
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{ |
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width: 20px; |
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max-width: 20px; |
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min-width: 0; |
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} |
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|
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.file-link |
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{ |
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margin-left: 0.5em; |
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} |
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|
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.plot-link |
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{ |
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cursor: zoom-in; |
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margin: 0.25em; |
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} |
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|
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.comment input |
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{ |
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width: 95%; |
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min-width: 20em; |
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} |
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|
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.smalltable |
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{ |
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display: grid; |
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grid-template-columns: 1fr 1fr; |
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grid-row-gap: 0.25em; |
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grid-column-gap: 0.5em; |
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justify-items: start; |
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margin: 0.25em 0.75em; |
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} |
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|
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.smalltable > div:nth-child(odd) |
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{ |
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font-weight: bold; |
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justify-self: end; |
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} |
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|
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#ascatTable .ascat-result |
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{ |
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grid-column-start: 1; |
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grid-column-end: 3; |
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border-width: 1px; |
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border-radius: 4px; |
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padding: 0.25em 0.5em; |
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font-weight: bold; |
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} |
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|
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#ascatTable .result-comments |
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{ |
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font-style: italic; |
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padding: 0.5em; |
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color: #666666; |
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} |
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|
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</style> |
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</base:head> |
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<base:body data-read-only="1"> |
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<h1>Existing ASCAT results for <%=HTML.encodeTags(tumor.getName()) %> (tumor) and |
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<%=HTML.encodeTags(normal.getName()) %> (normal) </h1> |
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|
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<div id="page-data" class="datacontainer" |
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data-tumor-id="<%=tumorId%>" |
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data-normal-id="<%=normalId%>" |
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></div> |
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|
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<form name="reggie" id="wizard" class="wizard"> |
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<div class="content bottomborder"> |
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<div id="wizard-status"></div> |
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<div id="ascatItems"></div> |
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</div> |
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</form> |
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|
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<base:buttongroup subclass="dialogbuttons" id="dialogbuttons"> |
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<base:button id="close" title="Close" /> |
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</base:buttongroup> |
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|
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</base:body> |
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</base:page> |
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<% |
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} |
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finally |
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{ |
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if (dc != null) dc.close(); |
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} |
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%> |