extensions/net.sf.basedb.reggie/trunk/resources/methylation/beta_confirm.jsp

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6879 22 Nov 22 nicklas 1 <%@ page
6879 22 Nov 22 nicklas 2   pageEncoding="UTF-8"
6879 22 Nov 22 nicklas 3   session="false"
6879 22 Nov 22 nicklas 4   import="net.sf.basedb.core.User"
6879 22 Nov 22 nicklas 5   import="net.sf.basedb.core.DbControl"
6879 22 Nov 22 nicklas 6   import="net.sf.basedb.core.SessionControl"
6879 22 Nov 22 nicklas 7   import="net.sf.basedb.core.Application"
6879 22 Nov 22 nicklas 8   import="net.sf.basedb.clients.web.Base"  
6879 22 Nov 22 nicklas 9   import="net.sf.basedb.clients.web.util.HTML"  
6879 22 Nov 22 nicklas 10   import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
6879 22 Nov 22 nicklas 11 %>
6879 22 Nov 22 nicklas 12 <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
6879 22 Nov 22 nicklas 13 <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
6879 22 Nov 22 nicklas 14 <%
6879 22 Nov 22 nicklas 15 final SessionControl sc = Base.getExistingSessionControl(request, "net.sf.basedb.reggie", true);
6879 22 Nov 22 nicklas 16 final String ID = sc.getId();
6879 22 Nov 22 nicklas 17 final float scale = Base.getScale(sc);
6879 22 Nov 22 nicklas 18 final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
6879 22 Nov 22 nicklas 19 DbControl dc = null;
6879 22 Nov 22 nicklas 20 try
6879 22 Nov 22 nicklas 21 {
6879 22 Nov 22 nicklas 22   dc = sc.newDbControl();
6879 22 Nov 22 nicklas 23   final User user = User.getById(dc, sc.getLoggedInUserId());
6879 22 Nov 22 nicklas 24 %>
6879 22 Nov 22 nicklas 25 <base:page type="default" >
6879 22 Nov 22 nicklas 26 <base:head 
6879 22 Nov 22 nicklas 27   scripts="~../reggie-2.js,~beta_confirm.js" 
6879 22 Nov 22 nicklas 28   styles="path.css,~../css/reggie-2.css"
6879 22 Nov 22 nicklas 29   >
6879 22 Nov 22 nicklas 30 <style>
6879 22 Nov 22 nicklas 31 tr.highlight
6879 22 Nov 22 nicklas 32 {
6879 22 Nov 22 nicklas 33   border-top-width: 1px;
6879 22 Nov 22 nicklas 34   border-top-style: dotted;
6879 22 Nov 22 nicklas 35 }
6879 22 Nov 22 nicklas 36
6879 22 Nov 22 nicklas 37 #methylationTable
6879 22 Nov 22 nicklas 38 {
6879 22 Nov 22 nicklas 39   width: 100%; 
6879 22 Nov 22 nicklas 40   border-collapse: collapse;
6879 22 Nov 22 nicklas 41 }
6879 22 Nov 22 nicklas 42
6879 22 Nov 22 nicklas 43 #methylationTable thead
6879 22 Nov 22 nicklas 44 {
6879 22 Nov 22 nicklas 45   border-bottom-width: 1px;
6879 22 Nov 22 nicklas 46   border-top-width: 1px;
6879 22 Nov 22 nicklas 47 }
6879 22 Nov 22 nicklas 48
6879 22 Nov 22 nicklas 49 #methylationTable td
6879 22 Nov 22 nicklas 50 {
6879 22 Nov 22 nicklas 51   text-align: center;
6879 22 Nov 22 nicklas 52   min-width: 4.5em;
6879 22 Nov 22 nicklas 53 }
6879 22 Nov 22 nicklas 54
6879 22 Nov 22 nicklas 55 #methylationTable tbody td
6879 22 Nov 22 nicklas 56 {
6879 22 Nov 22 nicklas 57   padding-top: 1px;
6879 22 Nov 22 nicklas 58   padding-bottom: 1px;
6879 22 Nov 22 nicklas 59 }
6879 22 Nov 22 nicklas 60
6879 22 Nov 22 nicklas 61 #methylationTable .italic
6879 22 Nov 22 nicklas 62 {
6879 22 Nov 22 nicklas 63   font-style: italic;
6879 22 Nov 22 nicklas 64 }
6879 22 Nov 22 nicklas 65
6879 22 Nov 22 nicklas 66 #methylationTable .icon-col
6879 22 Nov 22 nicklas 67 {
6879 22 Nov 22 nicklas 68   width: 20px;
6879 22 Nov 22 nicklas 69   max-width: 20px;
6879 22 Nov 22 nicklas 70   min-width: 0;
6879 22 Nov 22 nicklas 71 }
6879 22 Nov 22 nicklas 72
6879 22 Nov 22 nicklas 73 .file-link
6879 22 Nov 22 nicklas 74 {
6879 22 Nov 22 nicklas 75   margin-left: 0.5em;
6879 22 Nov 22 nicklas 76 }
6879 22 Nov 22 nicklas 77
6879 22 Nov 22 nicklas 78 .comment input
6879 22 Nov 22 nicklas 79 {
6879 22 Nov 22 nicklas 80   width: 95%;
6879 22 Nov 22 nicklas 81   min-width: 20em;
6879 22 Nov 22 nicklas 82 }
6879 22 Nov 22 nicklas 83
6879 22 Nov 22 nicklas 84 </style>
6879 22 Nov 22 nicklas 85 </base:head>
6879 22 Nov 22 nicklas 86 <base:body>
6879 22 Nov 22 nicklas 87
6879 22 Nov 22 nicklas 88   <p:path><p:pathelement 
6879 22 Nov 22 nicklas 89     title="Reggie" href="<%="../index.jsp?ID="+ID%>" 
6879 22 Nov 22 nicklas 90     /><p:pathelement title="Confirm beta-value analysis" 
6879 22 Nov 22 nicklas 91     /></p:path>
6879 22 Nov 22 nicklas 92
6879 22 Nov 22 nicklas 93   <div class="content">
6879 22 Nov 22 nicklas 94   <form name="reggie" id="wizard" class="wizard">
6879 22 Nov 22 nicklas 95   
6879 22 Nov 22 nicklas 96   <div class="step" id="step-1">
6879 22 Nov 22 nicklas 97     <div class="step-no">1</div>
6879 22 Nov 22 nicklas 98     <div class="step-content">
6879 22 Nov 22 nicklas 99       
6879 22 Nov 22 nicklas 100       <div id="methylationItems"></div>
6879 22 Nov 22 nicklas 101       
6879 22 Nov 22 nicklas 102       <table class="step-form topborder">
6879 22 Nov 22 nicklas 103       <tr>
6879 22 Nov 22 nicklas 104         <td class="prompt"></td>
6879 22 Nov 22 nicklas 105         <td class="input"></td>
6879 22 Nov 22 nicklas 106         <td class="status"></td>
6879 22 Nov 22 nicklas 107         <td class="help">
6879 22 Nov 22 nicklas 108           ยน Probes with detectionP-value &gt; 0.01.
6879 22 Nov 22 nicklas 109         </td>
6879 22 Nov 22 nicklas 110       </tr>
6879 22 Nov 22 nicklas 111       </table>
6879 22 Nov 22 nicklas 112     
6879 22 Nov 22 nicklas 113     </div>
6879 22 Nov 22 nicklas 114   </div>
6879 22 Nov 22 nicklas 115       
6879 22 Nov 22 nicklas 116   <div id="wizard-status"></div>
6879 22 Nov 22 nicklas 117
6879 22 Nov 22 nicklas 118   <table class="navigation" id="navigation">
6879 22 Nov 22 nicklas 119   <tr>
6879 22 Nov 22 nicklas 120     <td><base:button id="gocancel" title="Cancel" /></td>
6879 22 Nov 22 nicklas 121     <td><base:button id="gonext" title="Next" image="<%=home+"/images/gonext.png"%>" /></td>
6879 22 Nov 22 nicklas 122     <td><base:button id="goregister" title="Register" image="<%=home+"/images/import.png"%>"  /></td>
6879 22 Nov 22 nicklas 123     <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td>
6879 22 Nov 22 nicklas 124     <td id="gonext-message" class="message"></td>
6879 22 Nov 22 nicklas 125   </tr>
6879 22 Nov 22 nicklas 126   </table>
6879 22 Nov 22 nicklas 127
6879 22 Nov 22 nicklas 128   </form>
6879 22 Nov 22 nicklas 129   </div>
6879 22 Nov 22 nicklas 130   
6879 22 Nov 22 nicklas 131 </base:body>
6879 22 Nov 22 nicklas 132 </base:page>
6879 22 Nov 22 nicklas 133 <%
6879 22 Nov 22 nicklas 134 }
6879 22 Nov 22 nicklas 135 finally
6879 22 Nov 22 nicklas 136 {
6879 22 Nov 22 nicklas 137   if (dc != null) dc.close();
6879 22 Nov 22 nicklas 138 }
6879 22 Nov 22 nicklas 139 %>

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