extensions/net.sf.basedb.reggie/trunk/resources/sampleproc/specimentube.jsp

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1372 23 May 11 martin 1 <%@ page
1372 23 May 11 martin 2   pageEncoding="UTF-8"
1372 23 May 11 martin 3   session="false"
1372 23 May 11 martin 4   import="net.sf.basedb.core.User"
1400 10 Oct 11 martin 5   import="net.sf.basedb.core.BioPlate"
1400 10 Oct 11 martin 6   import="net.sf.basedb.core.DbControl"  
1400 10 Oct 11 martin 7   import="net.sf.basedb.core.Item"
1400 10 Oct 11 martin 8   import="net.sf.basedb.core.ItemContext"
1372 23 May 11 martin 9   import="net.sf.basedb.core.SessionControl"
1538 21 Feb 12 nicklas 10   import="net.sf.basedb.core.Application"
1372 23 May 11 martin 11   import="net.sf.basedb.clients.web.Base"  
1538 21 Feb 12 nicklas 12   import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
1400 10 Oct 11 martin 13   import="net.sf.basedb.util.Values"
1400 10 Oct 11 martin 14   import="java.util.List"
1372 23 May 11 martin 15 %>
1372 23 May 11 martin 16 <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
1372 23 May 11 martin 17 <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
1372 23 May 11 martin 18 <%
3976 26 May 16 nicklas 19 final SessionControl sc = Base.getExistingSessionControl(request, "net.sf.basedb.reggie", true);
1372 23 May 11 martin 20 final String ID = sc.getId();
1372 23 May 11 martin 21 final float scale = Base.getScale(sc);
1538 21 Feb 12 nicklas 22 final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
1372 23 May 11 martin 23 DbControl dc = null;
1372 23 May 11 martin 24 try
1372 23 May 11 martin 25 {
1372 23 May 11 martin 26   dc = sc.newDbControl();
1372 23 May 11 martin 27   final User user = User.getById(dc, sc.getLoggedInUserId());
1372 23 May 11 martin 28 %>
1372 23 May 11 martin 29 <base:page type="default" >
2677 17 Sep 14 nicklas 30 <base:head 
2677 17 Sep 14 nicklas 31   scripts="~../reggie-2.js,~specimentube.js" 
2677 17 Sep 14 nicklas 32   styles="path.css,~../css/reggie-2.css"
3602 16 Nov 15 nicklas 33 >
3602 16 Nov 15 nicklas 34 <style>
3602 16 Nov 15 nicklas 35 .yellow-label td:not(.help)
3602 16 Nov 15 nicklas 36 {
3602 16 Nov 15 nicklas 37   background-color: #FFFFC0;
3602 16 Nov 15 nicklas 38 }
5333 28 Mar 19 nicklas 39
5333 28 Mar 19 nicklas 40 .pause-specimen .storage-box td:not(.help)
5333 28 Mar 19 nicklas 41 {
5333 28 Mar 19 nicklas 42   background-color: #FFF0FF;
5333 28 Mar 19 nicklas 43 }
5333 28 Mar 19 nicklas 44
4546 29 Jun 17 nicklas 45 .moreboxes
4546 29 Jun 17 nicklas 46 {
4546 29 Jun 17 nicklas 47   background-color: #ffff00;
4546 29 Jun 17 nicklas 48   color: #000000;
4546 29 Jun 17 nicklas 49   padding: 2px 0.5em;
4546 29 Jun 17 nicklas 50   margin-bottom: 0.25em;
4546 29 Jun 17 nicklas 51   margin-left: 0.5em;
4546 29 Jun 17 nicklas 52   border-width: 2px;
4546 29 Jun 17 nicklas 53   border-radius: 5px;
4546 29 Jun 17 nicklas 54 }
4546 29 Jun 17 nicklas 55
4546 29 Jun 17 nicklas 56 .moreboxes::before
4546 29 Jun 17 nicklas 57 {
4546 29 Jun 17 nicklas 58   content: url('../images/warning.png');
4546 29 Jun 17 nicklas 59   vertical-align: top;
4546 29 Jun 17 nicklas 60   margin-right: 0.25em;
4546 29 Jun 17 nicklas 61 }
4546 29 Jun 17 nicklas 62
3602 16 Nov 15 nicklas 63 </style>
3602 16 Nov 15 nicklas 64
3602 16 Nov 15 nicklas 65 </base:head>
2677 17 Sep 14 nicklas 66 <base:body>
1372 23 May 11 martin 67
1538 21 Feb 12 nicklas 68   <p:path><p:pathelement 
1915 21 Mar 13 nicklas 69     title="Reggie" href="<%="../index.jsp?ID="+ID%>" 
1538 21 Feb 12 nicklas 70     /><p:pathelement title="Specimen tube registration" 
1538 21 Feb 12 nicklas 71     /></p:path>
1538 21 Feb 12 nicklas 72   
1538 21 Feb 12 nicklas 73   <div class="content">
1372 23 May 11 martin 74
2677 17 Sep 14 nicklas 75   <form name="reggie" id="wizard" class="wizard">
1372 23 May 11 martin 76   
2677 17 Sep 14 nicklas 77   <div class="step" id="step-1">
2677 17 Sep 14 nicklas 78     <div class="step-no">1</div>
2677 17 Sep 14 nicklas 79     <div class="step-title">Enter Case Name</div>
2677 17 Sep 14 nicklas 80     <div class="step-content">
2677 17 Sep 14 nicklas 81   
2677 17 Sep 14 nicklas 82       <table class="step-form">
2677 17 Sep 14 nicklas 83       <tr>
1372 23 May 11 martin 84         <td class="prompt">Case name</td>
2677 17 Sep 14 nicklas 85         <td class="input">
2677 17 Sep 14 nicklas 86           <input type="text" name="caseName" id="caseName"
2677 17 Sep 14 nicklas 87             class="required auto-init" data-auto-init="focus" 
2677 17 Sep 14 nicklas 88             style="width: 12em;" maxlength="12">
2677 17 Sep 14 nicklas 89         </td>
2677 17 Sep 14 nicklas 90         <td class="status" id="caseName.status"></td>
2677 17 Sep 14 nicklas 91         <td class="help">
2677 17 Sep 14 nicklas 92           <span id="caseName.message" class="message"></span>
2677 17 Sep 14 nicklas 93           The 7-digit case (barcode) associated with this specimen tube.
2677 17 Sep 14 nicklas 94         </td>
1372 23 May 11 martin 95       </tr>
1372 23 May 11 martin 96       </table>
2677 17 Sep 14 nicklas 97     </div>
2677 17 Sep 14 nicklas 98   </div>
1375 14 Jun 11 martin 99   
2677 17 Sep 14 nicklas 100   <div class="step" id="step-2">
2677 17 Sep 14 nicklas 101     <div class="step-no">2</div>
2677 17 Sep 14 nicklas 102     <div class="step-title">Enter Case information</div>
2677 17 Sep 14 nicklas 103     <div class="step-content">
2677 17 Sep 14 nicklas 104
2677 17 Sep 14 nicklas 105       <table class="step-form">
2677 17 Sep 14 nicklas 106       <tr>
2677 17 Sep 14 nicklas 107         <td class="prompt">Number of tubes</td>
2677 17 Sep 14 nicklas 108         <td class="input">
2677 17 Sep 14 nicklas 109           <input type="text" name="nofTubes" id="nofTubes"
2677 17 Sep 14 nicklas 110             class="required auto-init" data-auto-init="focus-on-enter" data-next-focus="arrivalDate"
4516 01 Jun 17 nicklas 111               style="width: 12em;" maxlength="1" value="1">
2677 17 Sep 14 nicklas 112         </td>
2677 17 Sep 14 nicklas 113         <td class="status" id="nofTubes.status"></td>
2677 17 Sep 14 nicklas 114         <td class="help">
2677 17 Sep 14 nicklas 115           <span id="nofTubes.message" class="message"></span>
2677 17 Sep 14 nicklas 116           Number of tubes in this case.
2677 17 Sep 14 nicklas 117         </td>
2677 17 Sep 14 nicklas 118       </tr>
2677 17 Sep 14 nicklas 119       <tr valign="top">
2677 17 Sep 14 nicklas 120         <td class="prompt">Arrival date</td>
2677 17 Sep 14 nicklas 121         <td class="input">
2677 17 Sep 14 nicklas 122           <input type="text" name="arrivalDate" id="arrivalDate" 
2677 17 Sep 14 nicklas 123             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="samplingDate"
2677 17 Sep 14 nicklas 124             data-disallow-future-date="1"
2677 17 Sep 14 nicklas 125             style="width: 12em;" maxlength="10">
2677 17 Sep 14 nicklas 126         </td>
2677 17 Sep 14 nicklas 127         <td class="status" id="arrivalDate.status"></td>
2677 17 Sep 14 nicklas 128         <td class="help">
2677 17 Sep 14 nicklas 129           <span id="arrivalDate.message" class="message"></span>
2677 17 Sep 14 nicklas 130           Date when the specimen tubes arrived(YYYYMMDD or MMDD).
2677 17 Sep 14 nicklas 131         </td>
2677 17 Sep 14 nicklas 132       </tr>
2677 17 Sep 14 nicklas 133       <tr>
2677 17 Sep 14 nicklas 134         <td class="prompt">Sampling date</td>
2677 17 Sep 14 nicklas 135         <td class="input">
2677 17 Sep 14 nicklas 136           <input type="text" name="samplingDate" id="samplingDate"
2677 17 Sep 14 nicklas 137             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="samplingTime"
2677 17 Sep 14 nicklas 138             style="width: 12em;" maxlength="10">
2677 17 Sep 14 nicklas 139           Time <input type="text" name="samplingTime" id="samplingTime"
2677 17 Sep 14 nicklas 140             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="rnaLaterDate"
2677 17 Sep 14 nicklas 141             style="width: 6em;" maxlength="5"></span>
2677 17 Sep 14 nicklas 142         </td>
2677 17 Sep 14 nicklas 143         <td class="status" id="samplingDate.status"></td>
2677 17 Sep 14 nicklas 144         <td class="help">
2677 17 Sep 14 nicklas 145           <span id="samplingDate.message" class="message"></span>
2677 17 Sep 14 nicklas 146           Date (+time) of surgical removal (YYYYMMDD, HHMM)
2677 17 Sep 14 nicklas 147         </td>
2677 17 Sep 14 nicklas 148       </tr>
2677 17 Sep 14 nicklas 149       <tr>
2677 17 Sep 14 nicklas 150         <td class="prompt">RNA Later date</td>
2677 17 Sep 14 nicklas 151         <td class="input">
2677 17 Sep 14 nicklas 152           <input type="text" name="rnaLaterDate" id="rnaLaterDate"
2677 17 Sep 14 nicklas 153             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="rnaLaterTime"
2677 17 Sep 14 nicklas 154             style="width: 12em;" maxlength="10">
2677 17 Sep 14 nicklas 155           Time <input type="text" name="rnaLaterTime" id="rnaLaterTime"
2801 13 Oct 14 nicklas 156             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="biopsyType"
2677 17 Sep 14 nicklas 157             style="width: 6em;" maxlength="5">
2677 17 Sep 14 nicklas 158           </td>
2677 17 Sep 14 nicklas 159         <td class="status" id="rnaLaterDate.status"></td>
2677 17 Sep 14 nicklas 160         <td class="help">
2677 17 Sep 14 nicklas 161           <span id="rnaLaterDate.message" class="message"></span>
2677 17 Sep 14 nicklas 162           Date+time of pathology handling (YYYYMMDD, HHMM)
2677 17 Sep 14 nicklas 163         </td>
2677 17 Sep 14 nicklas 164       </tr>
2677 17 Sep 14 nicklas 165       <tr>
2677 17 Sep 14 nicklas 166         <td class="prompt">Laterality</td>
2677 17 Sep 14 nicklas 167         <td class="input">
2677 17 Sep 14 nicklas 168           <label id="lateralityLeft"><input type="radio" name="laterality" id="lateralityLEFT" value="LEFT">LEFT</label><br>
2677 17 Sep 14 nicklas 169           <label id="lateralityRight"><input type="radio" name="laterality" id="lateralityRIGHT" value="RIGHT">RIGHT</label><br>
2677 17 Sep 14 nicklas 170           <label id="lateralityUnknown"><input type="radio" name="laterality" id="lateralityU" value="" checked><i>unknown</i></label>
2677 17 Sep 14 nicklas 171           <span id="lateralityFromCase" style="display: none; font-style: italic;">(From existing case)</span>
2677 17 Sep 14 nicklas 172         </td>
2677 17 Sep 14 nicklas 173         <td class="status" id="laterality.status"></td>
2677 17 Sep 14 nicklas 174         <td class="help">
2677 17 Sep 14 nicklas 175           <span id="laterality.message" class="message"></span>
2677 17 Sep 14 nicklas 176         </td>
2677 17 Sep 14 nicklas 177       </tr>
2677 17 Sep 14 nicklas 178       <tr>
2677 17 Sep 14 nicklas 179         <td class="prompt">Biopsy type</td>
2677 17 Sep 14 nicklas 180         <td class="input">
2677 17 Sep 14 nicklas 181           <select name="biopsyType" id="biopsyType"
2677 17 Sep 14 nicklas 182             class="auto-init" data-auto-init="focus-on-enter" data-next-focus="otherPathNote">
2677 17 Sep 14 nicklas 183             <option selected value="" >unknown
2677 17 Sep 14 nicklas 184             <option value="SpecimenSurgery">SpecimenSurgery
2677 17 Sep 14 nicklas 185             <option value="SpecimenCoreBiopsy">SpecimenCoreBiopsy
2840 20 Oct 14 nicklas 186             <option value="SpecimenCoreBiopsy2nd">SpecimenCoreBiopsy2nd
2677 17 Sep 14 nicklas 187             <option value="SpecimenFineNeedleAspiration" >SpecimenFineNeedleAspiration
2677 17 Sep 14 nicklas 188           </select>
2677 17 Sep 14 nicklas 189         </td>
2677 17 Sep 14 nicklas 190         <td class="status" id="biopsyType.status"></td>
2677 17 Sep 14 nicklas 191         <td class="help">
2677 17 Sep 14 nicklas 192           <span id="biopsyType.message" class="message"></span>
2677 17 Sep 14 nicklas 193         </td>
2677 17 Sep 14 nicklas 194       </tr>
2677 17 Sep 14 nicklas 195       <tr class="align-top">
2677 17 Sep 14 nicklas 196         <td class="prompt">Other path note</td>
2677 17 Sep 14 nicklas 197         <td class="input">
2677 17 Sep 14 nicklas 198           <textarea name="otherPathNote" id="otherPathNote" rows="3"></textarea>
2677 17 Sep 14 nicklas 199         </td>
2677 17 Sep 14 nicklas 200         <td class="status" id="otherPathNote.status"></td>
2677 17 Sep 14 nicklas 201         <td class="help">
2677 17 Sep 14 nicklas 202           <span id="otherPathNote.message" class="message"></span>
2801 13 Oct 14 nicklas 203           In this field, enter ALL text noted on the referral form by the pathologist.
2677 17 Sep 14 nicklas 204         </td>
2677 17 Sep 14 nicklas 205       </tr>
2677 17 Sep 14 nicklas 206       </table>
2677 17 Sep 14 nicklas 207     </div>
2677 17 Sep 14 nicklas 208   </div>
1389 09 Sep 11 martin 209     
2677 17 Sep 14 nicklas 210   <div class="step" id="step-3">
2677 17 Sep 14 nicklas 211     <div class="step-no">3</div>
2677 17 Sep 14 nicklas 212     <div class="step-title">Enter tube information</div>
2677 17 Sep 14 nicklas 213     <div class="step-content">
2677 17 Sep 14 nicklas 214     
2677 17 Sep 14 nicklas 215       <table id="specimen-tubes" class="step-form">
2677 17 Sep 14 nicklas 216       </table>
2677 17 Sep 14 nicklas 217     </div>
1375 14 Jun 11 martin 218   </div>
1375 14 Jun 11 martin 219   
2677 17 Sep 14 nicklas 220   <div id="wizard-status"></div>
2677 17 Sep 14 nicklas 221
2677 17 Sep 14 nicklas 222   <table class="navigation" id="navigation">
1375 14 Jun 11 martin 223   <tr>
2677 17 Sep 14 nicklas 224     <td><base:button id="gocancel" title="Cancel" /></td>
2677 17 Sep 14 nicklas 225     <td><base:button id="gonext" title="Next" image="<%=home+"/images/gonext.png"%>" /></td>
2677 17 Sep 14 nicklas 226     <td><base:button id="goregister" title="Register" image="<%=home+"/images/import.png"%>"  /></td>
2677 17 Sep 14 nicklas 227     <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td>
2677 17 Sep 14 nicklas 228     <td><base:button id="gostop" title="Stop" image="cancel.png" /></td>
2677 17 Sep 14 nicklas 229     <td id="gonext-message" class="message"></td>
1375 14 Jun 11 martin 230   </tr>
1372 23 May 11 martin 231   </table>
1372 23 May 11 martin 232   
1372 23 May 11 martin 233   </form>
1538 21 Feb 12 nicklas 234   </div>
1372 23 May 11 martin 235   
1372 23 May 11 martin 236 </base:body>
1372 23 May 11 martin 237 </base:page>
1372 23 May 11 martin 238 <%
1372 23 May 11 martin 239 }
1372 23 May 11 martin 240 finally
1372 23 May 11 martin 241 {
1372 23 May 11 martin 242   if (dc != null) dc.close();
1372 23 May 11 martin 243 }
1372 23 May 11 martin 244 %>

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