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package net.sf.basedb.reggie.plugins.release; |
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import org.json.simple.JSONArray; |
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import org.json.simple.JSONObject; |
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import net.sf.basedb.core.BioSource; |
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import net.sf.basedb.core.DbControl; |
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import net.sf.basedb.core.ItemSubtype; |
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import net.sf.basedb.reggie.JsonUtil; |
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import net.sf.basedb.reggie.dao.Subtype; |
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/** |
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Cohort writer implementation for the No and RetroNo items. |
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@since 4.21 |
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*/ |
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public class NoWriter |
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extends CohortWriter |
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{ |
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private final ItemSubtype noType; |
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private final ItemSubtype retroNoType; |
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|
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public NoWriter(DbControl dc, ReleaseWriterOptions options) |
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{ |
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super(dc, options); |
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this.noType = Subtype.NO.get(dc); |
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this.retroNoType = Subtype.RETRO_NO.get(dc); |
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} |
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|
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@Override |
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public JSONArray toJSONObjects(CohortItem item) |
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{ |
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BioSource no = item.getPatient().getItem(); |
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ItemSubtype type = no.getItemSubtype(); |
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if (!noType.equals(type) && !retroNoType.equals(type)) return null; |
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|
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JSONObject json = new JSONObject(); |
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json.put("name", no.getExternalId()); |
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json.put("type", no.getType().name()); |
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json.put("subtype", noType.getName()); // Both "No" and "RetroNo" are exported as "No" |
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return JsonUtil.asArray(json); |
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} |
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|
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} |