svndigest - svndigest

Rev	Date	Author	Line
5040	19 Oct 18	nicklas	1	package net.sf.basedb.reggie.vcf;
5040	19 Oct 18	nicklas	2
5040	19 Oct 18	nicklas	3	/**
5040	19 Oct 18	nicklas	4	Filter to apply when parsing a VCF file.
5040	19 Oct 18	nicklas	5
5040	19 Oct 18	nicklas	6	@author nicklas
5040	19 Oct 18	nicklas	7	@since 4.20
5040	19 Oct 18	nicklas	8	*/
5040	19 Oct 18	nicklas	9	public interface VcfDataFilter
5040	19 Oct 18	nicklas	10	{
5040	19 Oct 18	nicklas	11
7413	10 Nov 23	nicklas	12
5040	19 Oct 18	nicklas	13	/**
7413	10 Nov 23	nicklas	14	Should the given SNP data be accepted or not?
7413	10 Nov 23	nicklas	15	The default implementation always return true.
7413	10 Nov 23	nicklas	16	@since 4.50
7413	10 Nov 23	nicklas	17	*/
7413	10 Nov 23	nicklas	18	public default boolean acceptSnp(SnpData snp)
7413	10 Nov 23	nicklas	19	{
7413	10 Nov 23	nicklas	20	return true;
7413	10 Nov 23	nicklas	21	}
7413	10 Nov 23	nicklas	22
7413	10 Nov 23	nicklas	23	/**
5040	19 Oct 18	nicklas	24	Should the given genotype data be accepted or not?
5040	19 Oct 18	nicklas	25	The default implementation always return true.
5040	19 Oct 18	nicklas	26	*/
5040	19 Oct 18	nicklas	27	public default boolean accept(GtData gt, SnpData snp)
5040	19 Oct 18	nicklas	28	{
5040	19 Oct 18	nicklas	29	return true;
5040	19 Oct 18	nicklas	30	}
5040	19 Oct 18	nicklas	31
5040	19 Oct 18	nicklas	32	}