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plugins/base1/se.lu.onk.ReplicateError/trunk/lib/runAA

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Rev	Date	Author	Line
21	20 Oct 05	enell	1	#!/bin/bash -
784	18 Sep 08	jari	2	#
784	18 Sep 08	jari	3	# $Id$
784	18 Sep 08	jari	4	#
784	18 Sep 08	jari	5	# Copyright (C) 2005 Johan Enell
784	18 Sep 08	jari	6	# Copyright (C) 2008 Jari Häkkinen
784	18 Sep 08	jari	7	#
784	18 Sep 08	jari	8	# This file is part of the se.lu.onk.MergeBioAssay plug-in for
784	18 Sep 08	jari	9	# BASE. Available at http://baseplugins.thep.lu.se/ and BASE web site
784	18 Sep 08	jari	10	# is http://base.thep.lu.se
784	18 Sep 08	jari	11	#
784	18 Sep 08	jari	12	# This is free software; you can redistribute it and/or modify it
784	18 Sep 08	jari	13	# under the terms of the GNU General Public License as published by
784	18 Sep 08	jari	14	# the Free Software Foundation; either version 3 of the License, or
784	18 Sep 08	jari	15	# (at your option) any later version.
784	18 Sep 08	jari	16	#
784	18 Sep 08	jari	17	# The software is distributed in the hope that it will be useful, but
784	18 Sep 08	jari	18	# WITHOUT ANY WARRANTY; without even the implied warranty of
784	18 Sep 08	jari	19	# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
784	18 Sep 08	jari	20	# General Public License for more details.
784	18 Sep 08	jari	21	#
784	18 Sep 08	jari	22	# You should have received a copy of the GNU General Public License
784	18 Sep 08	jari	23	# along with BASE. If not, see <http://www.gnu.org/licenses/>.
784	18 Sep 08	jari	24	#
21	20 Oct 05	enell	25
21	20 Oct 05	enell	26	progdir="`dirname \"$0\"`"
766	16 Sep 08	jari	27
766	16 Sep 08	jari	28	java -Xmx512M -cp "$CLASSPATH:$progdir/BaseFile/BaseFile.jar:$progdir/ReplicateError.jar" replicateerror.ReplicateError -aa
52	25 Nov 05	enell	29	R --no-save --slave < plot.R > R.out
766	16 Sep 08	jari	30	cp $progdir/AAindex.html index.html
30	08 Nov 05	enell	31	cp $progdir/base.css data/
766	16 Sep 08	jari	32	cp $progdir/AAtabs.html data/tabs.html
21	20 Oct 05	enell	33	rm -f data/*.data