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plugins/base2/uk.ac.ebi.tab2mage/trunk/Tab2MageImporter/tab2mage-spreadsheet-rules.txt

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Rev	Date	Author	Line
452	31 Oct 07	dominic	1	Tab2Mage Files Specification Instructions. (All the example zip files provided on the downlad page adhere to this instructions)
439	23 Oct 07	dominic	2	----------------------------------------------------------
439	23 Oct 07	dominic	3	Experiment Section
439	23 Oct 07	dominic	4	---------------------------
439	23 Oct 07	dominic	5
452	31 Oct 07	dominic	6	Experiment name (i.e. name in the tab2mage file) , and submitter are mandatory and must be provided.
439	23 Oct 07	dominic	7
439	23 Oct 07	dominic	8	Protocol Section
439	23 Oct 07	dominic	9	-----------------------
439	23 Oct 07	dominic	10
439	23 Oct 07	dominic	11	accession, text, type, name, parameters headers must all be provided.
439	23 Oct 07	dominic	12	For every protocol with an accession number e.g P-TOXM-3, the protocol type, protocol name must be provided else the tab2mage spreadsheet is not valid.
439	23 Oct 07	dominic	13	If parameters are used in the Hybridization section, they must be specified here otherwise, the loading will fail.
439	23 Oct 07	dominic	14
439	23 Oct 07	dominic	15
439	23 Oct 07	dominic	16	Hybridization Section
439	23 Oct 07	dominic	17	-----------------------------
439	23 Oct 07	dominic	18	Header:
439	23 Oct 07	dominic	19	----------
439	23 Oct 07	dominic	20	Hybridization, Labeled Extract, Dye, Extract, Sample, Biosource, Array[accession] must be provided.
439	23 Oct 07	dominic	21	At least one BioMaterial Characteristics should be provided
439	23 Oct 07	dominic	22	At least one Experimental Factor should be provided
439	23 Oct 07	dominic	23	Protocol headers e.g. Protocol[Hybridization] must be amongst the known ones allowed in the Tab2Mage Specification (http://tab2mage.sourceforge.net/.)
439	23 Oct 07	dominic	24	If the experimnent involves pooling, protocol[pool] header must be specified in the Hybridization section and the Protocol section
439	23 Oct 07	dominic	25
452	31 Oct 07	dominic	26	Hybridization Data
452	31 Oct 07	dominic	27	------------------------
439	23 Oct 07	dominic	28	The raw data file specified in the File[raw] column must be provided in the zip file to be loaded.
439	23 Oct 07	dominic	29	If an image file is provided it must be provided in the zip file to be loaded.
439	23 Oct 07	dominic	30	Array Design specified in the Array[accession] column must exist in BASE2 and owned /or shared to the user running the tab2mage importer.
439	23 Oct 07	dominic	31
439	23 Oct 07	dominic	32	The above instructions are in addition to the ArrayExpress Tab2Mage Instructions at - http://tab2mage.sourceforge.net/ . Please check this out for more information if needed.