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<?xml version="1.0"?> |
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<html xmlns="http://www.w3.org/1999/xhtml" |
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xmlns:v="http://localhost" xml:lang="en" lang="en"> |
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<head> |
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<link rel="stylesheet" type="text/css" href="../css/exercise.css" /> |
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<link rel="stylesheet" type="text/css" |
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href="../css/default.css" /> |
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<title>BitBock and ProSE Exercise</title> |
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</head> |
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<body> |
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<h1>Handling orders in BitBock and ProSE</h1> |
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<h3>Overview</h3> |
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<p>In this exercise you will learn how to handle incomming |
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orders. Orders are send in by the customer using this |
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<a href="http://proteomics.bmc.lu.se/bmcform/" target="_blank"> |
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web form</a>. An email notification let's you know when the order |
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has been posted. At this stage you accept the order using the |
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<a href="https://proteios.immunoprot.lth.se/bitbock/app.html" |
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target="bitbock">BitBock</a>system. If the order is accepted you |
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register the order in ProSE from which the customer will later be |
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able to recieve his results. When registering an order in ProSE a |
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project is created together with samples. You then proceed to |
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execute the order. Once finnished all data files should be |
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available within the project in ProSE. The final stage includes |
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data analysis and sharing results with the customer. |
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<br />Let me guide you through each step</p> |
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<ol> |
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<li>Accept the order |
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<ul> |
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<li>Login to |
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<a href="https://proteios.immunoprot.lth.se/bitbock/app.html" |
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target="bitbock">BitBock</a>.</li> |
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<li>New orders are found at |
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<b>/usr/share/bmcform/tags/new</b></li> |
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<li>Accept the order by moving it to |
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<b>/usr/share/bmcfrom/tags/assigned/YOURNAME</b></li> |
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</ul></li> |
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<li>Register order in ProSE from BitBock |
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<ul> |
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<li> |
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<ul class="clickstream"> |
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<li>Bookmarks</li> |
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<li>Shared</li> |
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</ul> |
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</li> |
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<li>In the |
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<b>Finder</b> |
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<ul class="clickstream"> |
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<li>project</li> |
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</ul></li> |
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<li class="click">Register_order_in_ProSE.sh</li> |
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<li>Fill out the form</li> |
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<li class="click">Run</li> |
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<li>Wait for the response</li> |
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</ul></li> |
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<li>Execute order, here are some exercises you can use |
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<ul> |
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<li> |
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<a href="proteiosSE.html" target="otherExercise">Generating |
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a quantitative report from LC-MS runs with isobaric |
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labels</a> |
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</li> |
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</ul></li> |
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<li>Share data with customer |
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<ul> |
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<li>Login to proteios at |
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<a href="http://proteios.immunoprot.lth.se:8080/proteios/app" |
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target="proteios"> |
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http://proteios.immunoprot.lth.se:8080</a></li> |
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<li>Click the project you want to share.</li> |
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<li class="click">Members tab</li> |
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<li>Check all boxes next to the user you want to share data |
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to. The customer must be registered as a user by an |
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administrator first.</li> |
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<li class="click">Save</li> |
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</ul></li> |
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</ol>Your customer should now be able to access ProSE with his |
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account and view the results and continue his/her work. |
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<br /> |
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<br />Good work! smile ;-)</body> |
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</html> |