plugin/conf/xsd/piumsMatcher.xsd

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1118 21 Jan 07 fredrik 1 <?xml version="1.0" ?>
1118 21 Jan 07 fredrik 2 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" attributeFormDefault="unqualified" elementFormDefault="qualified">
1118 21 Jan 07 fredrik 3   <xs:element name="matcher">
1118 21 Jan 07 fredrik 4     <xs:complexType>
1118 21 Jan 07 fredrik 5       <xs:sequence>
1118 21 Jan 07 fredrik 6         <xs:element name="version" minOccurs="0"/>
1118 21 Jan 07 fredrik 7         <xs:element name="registered_to" minOccurs="0"/>
1118 21 Jan 07 fredrik 8         <xs:element name="parameters" minOccurs="0">
1118 21 Jan 07 fredrik 9           <xs:complexType>
1118 21 Jan 07 fredrik 10             <xs:sequence>
1118 21 Jan 07 fredrik 11               <xs:element name="enzyme" minOccurs="0"/>
1118 21 Jan 07 fredrik 12               <xs:element name="fasta_file" minOccurs="0"/>
1118 21 Jan 07 fredrik 13               <xs:element name="peak_file_list" minOccurs="0">
1118 21 Jan 07 fredrik 14                 <xs:complexType >
1118 21 Jan 07 fredrik 15                   <xs:sequence>
1118 21 Jan 07 fredrik 16                     <xs:element name="file" minOccurs="0" maxOccurs="unbounded"/>
1118 21 Jan 07 fredrik 17                   </xs:sequence>
1118 21 Jan 07 fredrik 18                 </xs:complexType>
1118 21 Jan 07 fredrik 19               </xs:element>
1118 21 Jan 07 fredrik 20               <xs:element name="output_data_file" minOccurs="0"/>
1118 21 Jan 07 fredrik 21               <xs:element name="search_string_list" minOccurs="0">
1118 21 Jan 07 fredrik 22                 <xs:complexType>
1118 21 Jan 07 fredrik 23                   <xs:sequence>
1118 21 Jan 07 fredrik 24                     <xs:any minOccurs="0" maxOccurs="unbounded" processContents="skip"/>
1118 21 Jan 07 fredrik 25                   </xs:sequence>
1118 21 Jan 07 fredrik 26                 </xs:complexType>
1118 21 Jan 07 fredrik 27               </xs:element>
1118 21 Jan 07 fredrik 28               <xs:element name="subtract_hydrogen_mass" minOccurs="0"/>
1118 21 Jan 07 fredrik 29               <xs:element name="maximum_mass" minOccurs="0"/>
1118 21 Jan 07 fredrik 30               <xs:element name="minimum_mass" minOccurs="0"/>
1118 21 Jan 07 fredrik 31               <xs:element name="missed_cleavages" minOccurs="0"/>
1118 21 Jan 07 fredrik 32               <xs:element name="static_ptms" minOccurs="0">
1118 21 Jan 07 fredrik 33                 <xs:complexType>
1118 21 Jan 07 fredrik 34                   <xs:sequence>
1118 21 Jan 07 fredrik 35                     <xs:any minOccurs="0" maxOccurs="unbounded" processContents="skip"/>
1118 21 Jan 07 fredrik 36                   </xs:sequence>
1118 21 Jan 07 fredrik 37                 </xs:complexType>
1118 21 Jan 07 fredrik 38               </xs:element>
1118 21 Jan 07 fredrik 39               <xs:element name="variable_ptms" minOccurs="0">
1118 21 Jan 07 fredrik 40                 <xs:complexType>
1118 21 Jan 07 fredrik 41                   <xs:sequence>
1118 21 Jan 07 fredrik 42                     <xs:any minOccurs="0" maxOccurs="unbounded" processContents="skip"/>
1118 21 Jan 07 fredrik 43                   </xs:sequence>
1118 21 Jan 07 fredrik 44                 </xs:complexType>
1118 21 Jan 07 fredrik 45               </xs:element>
1118 21 Jan 07 fredrik 46               <xs:element name="mass_tolerance" minOccurs="0"/>
1118 21 Jan 07 fredrik 47               <xs:element name="mass_tolerance_model" minOccurs="0"/>
1118 21 Jan 07 fredrik 48               <xs:element name="score_algorithm" minOccurs="0"/>
1118 21 Jan 07 fredrik 49               <xs:element name="random_dbase_size" minOccurs="0"/>
1118 21 Jan 07 fredrik 50               <xs:element name="top" minOccurs="0"/>
1118 21 Jan 07 fredrik 51             </xs:sequence>
1118 21 Jan 07 fredrik 52           </xs:complexType>
1118 21 Jan 07 fredrik 53         </xs:element>
1118 21 Jan 07 fredrik 54         <xs:element name="matcher_status" minOccurs="0">
1118 21 Jan 07 fredrik 55           <xs:complexType>
1118 21 Jan 07 fredrik 56             <xs:sequence>
1118 21 Jan 07 fredrik 57               <xs:element name="status" minOccurs="0"/>
1118 21 Jan 07 fredrik 58               <xs:element name="message" minOccurs="0"/>
1118 21 Jan 07 fredrik 59               <xs:element name="entries_searched" minOccurs="0"/>
1118 21 Jan 07 fredrik 60               <xs:element name="entries_database" minOccurs="0"/>
1118 21 Jan 07 fredrik 61               <xs:element name="ptm_definitions" minOccurs="0">
1118 21 Jan 07 fredrik 62                 <xs:complexType>
1118 21 Jan 07 fredrik 63                   <xs:sequence>
1118 21 Jan 07 fredrik 64                     <xs:any minOccurs="0" maxOccurs="unbounded" processContents="skip"/>
1118 21 Jan 07 fredrik 65                   </xs:sequence>
1118 21 Jan 07 fredrik 66                 </xs:complexType>
1118 21 Jan 07 fredrik 67               </xs:element>
1118 21 Jan 07 fredrik 68               <xs:element name="date_created" minOccurs="0"/>
1118 21 Jan 07 fredrik 69             </xs:sequence>
1118 21 Jan 07 fredrik 70           </xs:complexType>
1118 21 Jan 07 fredrik 71         </xs:element>
1118 21 Jan 07 fredrik 72         <xs:element name="match_list">
1118 21 Jan 07 fredrik 73           <xs:complexType>
1118 21 Jan 07 fredrik 74             <xs:sequence>
1118 21 Jan 07 fredrik 75               <xs:element name="score_record" minOccurs="0" maxOccurs="unbounded">
1118 21 Jan 07 fredrik 76                 <xs:complexType>
1118 21 Jan 07 fredrik 77                   <xs:sequence>
1118 21 Jan 07 fredrik 78                     <xs:element name="accession_number" type="xs:string"/>
1118 21 Jan 07 fredrik 79                     <xs:element name="log_score" type="xs:decimal"/>
1118 21 Jan 07 fredrik 80                     <xs:element name="log_Pvalue" type="xs:float"/>
1118 21 Jan 07 fredrik 81                     <xs:element name="score_quality" type="xs:decimal"/>
1118 21 Jan 07 fredrik 82                     <xs:element name="seq_coverage" type="xs:decimal"/>
1118 21 Jan 07 fredrik 83                     <xs:element name="seq_length" type="xs:integer"/>
1118 21 Jan 07 fredrik 84                     <xs:element name="no_of_peptides" type="xs:integer"/>
1118 21 Jan 07 fredrik 85                     <xs:element name="sequence" type="xs:string"/>
1118 21 Jan 07 fredrik 86                     <xs:element name="rank" type="xs:integer"/>
1118 21 Jan 07 fredrik 87                     <xs:element name="matched_peaks">
1118 21 Jan 07 fredrik 88                       <xs:complexType>
1118 21 Jan 07 fredrik 89                         <xs:sequence>
1118 21 Jan 07 fredrik 90                           <xs:element name="peak_list">
1118 21 Jan 07 fredrik 91                             <xs:complexType>
1118 21 Jan 07 fredrik 92                               <xs:sequence>
1118 21 Jan 07 fredrik 93                                 <xs:element name="peak" minOccurs="0" maxOccurs="unbounded">
1118 21 Jan 07 fredrik 94                                   <xs:complexType>
1118 21 Jan 07 fredrik 95                                     <xs:sequence>
1118 21 Jan 07 fredrik 96                                       <xs:element name="mass" type="xs:decimal"/>
1118 21 Jan 07 fredrik 97                                       <xs:element name="intensity" type="xs:decimal"/>
1118 21 Jan 07 fredrik 98                                       <xs:element name="ion_current" type="xs:string"/>
1118 21 Jan 07 fredrik 99                                       <xs:element name="width" type="xs:decimal"/>
1118 21 Jan 07 fredrik 100                                       <xs:element name="signal_noise_ratio" type="xs:decimal"/>
1118 21 Jan 07 fredrik 101                                       <xs:element name="seq_start" type="xs:integer"/>
1118 21 Jan 07 fredrik 102                                       <xs:element name="seq_end" type="xs:integer"/>
1118 21 Jan 07 fredrik 103                                       <xs:element name="missed_cleav" type="xs:integer"/>
1118 21 Jan 07 fredrik 104                                       <xs:element name="exp_mass" type="xs:decimal"/>
1118 21 Jan 07 fredrik 105                                       <xs:element name="mod_aa" type="xs:string"/>
1118 21 Jan 07 fredrik 106                                     </xs:sequence>
1118 21 Jan 07 fredrik 107                                   </xs:complexType>
1118 21 Jan 07 fredrik 108                                 </xs:element>
1118 21 Jan 07 fredrik 109                               </xs:sequence>
1118 21 Jan 07 fredrik 110                             </xs:complexType>
1118 21 Jan 07 fredrik 111                           </xs:element>
1118 21 Jan 07 fredrik 112                         </xs:sequence>
1118 21 Jan 07 fredrik 113                       </xs:complexType>
1118 21 Jan 07 fredrik 114                     </xs:element>
1118 21 Jan 07 fredrik 115                     <xs:element name="unmatched_peaks">
1118 21 Jan 07 fredrik 116                       <xs:complexType>
1118 21 Jan 07 fredrik 117                         <xs:sequence>
1118 21 Jan 07 fredrik 118                           <xs:element name="peak_list">
1118 21 Jan 07 fredrik 119                             <xs:complexType>
1118 21 Jan 07 fredrik 120                               <xs:sequence>
1118 21 Jan 07 fredrik 121                                 <xs:element name="peak" minOccurs="0" maxOccurs="unbounded">
1118 21 Jan 07 fredrik 122                                   <xs:complexType>
1118 21 Jan 07 fredrik 123                                     <xs:sequence>
1118 21 Jan 07 fredrik 124                                       <xs:element name="mass" type="xs:decimal"/>
1118 21 Jan 07 fredrik 125                                       <xs:element name="intensity" type="xs:string"/>
1118 21 Jan 07 fredrik 126                                       <xs:element name="ion_current" type="xs:string"/>
1118 21 Jan 07 fredrik 127                                       <xs:element name="width" type="xs:decimal"/>
1118 21 Jan 07 fredrik 128                                       <xs:element name="signal_noise_ratio" type="xs:decimal"/>
1118 21 Jan 07 fredrik 129                                     </xs:sequence>
1118 21 Jan 07 fredrik 130                                   </xs:complexType>
1118 21 Jan 07 fredrik 131                                 </xs:element>
1118 21 Jan 07 fredrik 132                               </xs:sequence>
1118 21 Jan 07 fredrik 133                             </xs:complexType>
1118 21 Jan 07 fredrik 134                           </xs:element>
1118 21 Jan 07 fredrik 135                         </xs:sequence>
1118 21 Jan 07 fredrik 136                       </xs:complexType>
1118 21 Jan 07 fredrik 137                     </xs:element>
1118 21 Jan 07 fredrik 138                   </xs:sequence>
1118 21 Jan 07 fredrik 139                 </xs:complexType>
1118 21 Jan 07 fredrik 140               </xs:element>
1118 21 Jan 07 fredrik 141             </xs:sequence>
1118 21 Jan 07 fredrik 142           </xs:complexType>
1118 21 Jan 07 fredrik 143         </xs:element>
1118 21 Jan 07 fredrik 144       </xs:sequence>
1118 21 Jan 07 fredrik 145     </xs:complexType>
1118 21 Jan 07 fredrik 146   </xs:element>
1118 21 Jan 07 fredrik 147 </xs:schema>

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