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<?xml version="1.0"?> |
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<!-- edited with XMLSpy v2006 sp2 U (http://www.altova.com) by Philip Jones (EMBL Outstation) --> |
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<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"> |
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<xsd:element name="ExperimentCollection"> |
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<xsd:annotation> |
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<xsd:documentation>The ExperimentCollection acts as a holder for any number of Experiments. Allows multiple Experiments to be returned when requested by a search as one XML file.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:complexContent> |
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<xsd:extension base="ProjectList"> |
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<xsd:attribute name="version" type="xsd:string" use="required" fixed="2.1"> |
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<xsd:annotation> |
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<xsd:documentation>The development version of this PRIDE schema.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:attribute> |
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</xsd:extension> |
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</xsd:complexContent> |
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</xsd:complexType> |
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</xsd:element> |
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<xsd:complexType name="ProjectList"> |
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<xsd:sequence> |
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<xsd:element name="Experiment" type="ExperimentType" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>An experiment encapsulates the peak lists (implemented using MzData) and identifications that form a single experiment submission to PRIDE.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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</xsd:sequence> |
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</xsd:complexType> |
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<xsd:complexType name="ExperimentType"> |
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<xsd:sequence> |
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<xsd:element name="ExperimentAccession" type="xsd:string" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>The ExperimentAccession element definition; (String). This value provides the unique identification for the experiment in PRIDE. It is not expected that this value would be provided by the submitter, but would be returned to the submitter on successful completion of their submission. </xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="Title" type="xsd:string"> |
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<xsd:annotation> |
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<xsd:documentation>The Title element definition; (String). This value is not a unique key (see ExperimentAccession above). Mandatory, free text.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="Reference" type="ReferenceType" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>These elements holds links to any literature citations for which this experiment provides supporting evidence.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="ShortLabel" type="xsd:string"> |
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<xsd:annotation> |
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<xsd:documentation>The mandatory ShortLabel element definition; (String). This value is not a unique key (see ExperimentAccession above).</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="Protocol"> |
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<xsd:annotation> |
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<xsd:documentation>The protocol element defines the sample processing steps that have been performed.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:sequence> |
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<xsd:element name="ProtocolName"> |
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<xsd:annotation> |
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<xsd:documentation>A descriptive name for the protocol</xsd:documentation> |
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</xsd:annotation> |
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<xsd:simpleType> |
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<xsd:restriction base="xsd:string"> |
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<xsd:minLength value="1"/> |
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</xsd:restriction> |
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</xsd:simpleType> |
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</xsd:element> |
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<xsd:element name="ProtocolSteps" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>Contains an ordered sequence of stepDescription elements that define this protocol. The order of the stepDescription elements indicates the chronological order of steps in the protocol.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:sequence> |
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<xsd:element name="StepDescription" type="paramType" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>Expansible description of the step in the protocol.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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</xsd:sequence> |
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</xsd:complexType> |
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</xsd:element> |
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</xsd:sequence> |
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</xsd:complexType> |
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</xsd:element> |
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<xsd:element name="mzData"> |
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<xsd:annotation> |
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<xsd:documentation>This schema can capture the use of a mass spectrometer, the data generated, and the initial processing of that data (to the level of the peak list). Peak lists are processed data from a mass spectrometry experiment. There can be multiple peak lists in an mzData file, which might be related via a separation, or just in sequence from an automated run. Any one peak list (mass spectrum) may also be composed of a number of acquisitions, which can be described individually herein. NOTE: This mzData element is modified from the PSI mzData schema in one respect: the spectrumList element is not mandatory.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:sequence> |
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<xsd:element name="cvLookup" type="cvLookupType" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>This stores the location, name, version and a short, arbitrarily assigned in-file reference label, for one or more controlled vocabulary sources. Short labels are for use elsewhere in the data file, primarily in the cvLabel attribute, to indicate the use of a particular source for an item of controlled vocabulary.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="description"> |
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<xsd:annotation> |
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<xsd:documentation>Each data set starts with a description section. This section captures 'general' information; such as the instrument on which the data were generated.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:sequence> |
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<xsd:element name="admin" type="adminType"> |
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<xsd:annotation> |
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<xsd:documentation>Administrative information pertaining to the entire mzData file (i.e. not specific to any part of the data set) is stored here.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="instrument" type="instrumentDescriptionType"> |
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<xsd:annotation> |
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<xsd:documentation>Instrument descripton (not 'run time' parameters, which should properly be captured in spectrumInstrument); these features must be common to all acquisitions.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="dataProcessing" type="dataProcessingType"> |
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<xsd:annotation> |
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<xsd:documentation>Description of the default processing by which the peak list(s) were generated.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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</xsd:sequence> |
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</xsd:complexType> |
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</xsd:element> |
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<xsd:element name="spectrumList"> |
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<xsd:annotation> |
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<xsd:documentation>All mass spectra and the acquisitions underlying them are described and attached here. Subsidiary data arrays are also both described and attached here.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:sequence> |
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<xsd:element name="spectrum" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>MODIFIED FROM THE ORIGINAL MZDATA SCHEMA - Allowed to be zero of these elements in PRIDE. This is an individual spectrum.The spectrum is considered to be composed of an array of acquisitions. There are two primary ways of representing data; base64 encoded binary (single or double precision) or arrays of simple data types. All arrays used to describe a single spectrum are the same length, with the same indexing.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:complexType> |
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<xsd:complexContent> |
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<xsd:extension base="spectrumType"/> |
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</xsd:complexContent> |
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</xsd:complexType> |
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</xsd:element> |
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</xsd:sequence> |
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<xsd:attribute name="count" type="xsd:int" use="required"> |
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<xsd:annotation> |
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<xsd:documentation>The number of spectra that are to be found in PRIDE. Note: users may retrieve PRIDE data without including all the spectra, however the count is still given.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:attribute> |
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</xsd:complexType> |
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</xsd:element> |
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</xsd:sequence> |
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<xsd:attribute name="version" type="xsd:string" use="required" fixed="1.05"> |
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<xsd:annotation> |
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<xsd:documentation>The development version of this mzData schema.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:attribute> |
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<xsd:attribute name="accessionNumber" type="xsd:string" use="required"> |
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<xsd:annotation> |
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<xsd:documentation>The accession number assigned arbitrarily to a particular mzData instance (i.e. data) file, by the generator of that file. This accession number is intended to serve as a (locally) unique reference by which to identify a particular mzData instance file, and is not intended to be related to any other accession number, such as that for a particular entry in a reference database such as Uniprot, or the element sampleName under the admin branch of mzData.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:attribute> |
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</xsd:complexType> |
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</xsd:element> |
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<xsd:element name="GelFreeIdentification" type="GelFreeIdentificationType" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>The GelFreeIdentification element (complex) is a concrete implementation of the abstract IdentificationType element, used to hold details of identifications that have arisen from techniques other than gel eletrophoresis, for example LC-MS/MS. </xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="TwoDimensionalIdentification" type="TwoDimensionalIdentificationType" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>This is a concrete implementation of the abstract Identification element. This is used to represent identifications based upon 2D Gel Electrophoresis. Details of the gel, location of the spot, pI and molecular weight are included in this identification element.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="additional" type="paramType" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>Subsidiary information about the experiment; a run of additional parameters captured as name-value pairs</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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</xsd:sequence> |
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</xsd:complexType> |
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<xsd:complexType name="IdentificationType" abstract="true"> |
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<xsd:annotation> |
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<xsd:documentation>The abstract Identification element definition; this is a complex type! Also note the different Collections! There are extended elements based on this one, please see below.</xsd:documentation> |
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</xsd:annotation> |
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<xsd:sequence> |
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<xsd:element name="Accession" type="xsd:string"> |
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<xsd:annotation> |
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<xsd:documentation>The database accession number for the protein. Note this value must be in conjunction with an appropriate AccessionVersion value (Version of the database) and Database value to unequivocally identify the protein.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="AccessionVersion" type="xsd:string" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>The optional version number (String) of the protein.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="SpliceIsoform" type="xsd:string" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>An optional identification of the splice isoform (String) of the protein identified.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="Database" type="xsd:string"> |
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<xsd:annotation> |
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<xsd:documentation>The Name of the Protein Database that this accession number references.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="DatabaseVersion" type="xsd:string" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>Optional version number / string for the database searched.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="PeptideItem" type="Peptide" minOccurs="0" maxOccurs="unbounded"> |
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<xsd:annotation> |
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<xsd:documentation>The collection of peptides that were identified to arrive at this protein identification. TODO: Note - in this iteration it is therefore mandatory to have identified a protein in order to include a peptide identification. This clearly limits the ability of PRIDE to hold peptidomics data and therefore may need to be modified.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="SpectrumReference" type="xsd:nonNegativeInteger" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>The SpectrumReference (Non-negative Integer) cross references to the id attribute of the Spectrum element that contains the spectra used for this identification.</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="additional" type="paramType" minOccurs="0"> |
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<xsd:annotation> |
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<xsd:documentation>Subsidiary information about the identification; a run of additional parameters captured as name-value pairs</xsd:documentation> |
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</xsd:annotation> |
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</xsd:element> |
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<xsd:element name="Score" type="xsd:double" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
219 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
220 |
<xsd:documentation>The optional score element (double) is used for the score from the search engine used for this identification. This needs to be interpreted in relation to the contents of the SearchEngine element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
221 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
222 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
223 |
<xsd:element name="Threshold" type="xsd:double" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
224 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
225 |
<xsd:documentation>The optional threshold element (double) needs to be interpreted in relation to the contents of the SearchEngine element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
226 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
227 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
228 |
<xsd:element name="SearchEngine" type="xsd:string" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
229 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
230 |
<xsd:documentation>The SearchEngine element (String) holds a reference to the search engine used for this identification.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
231 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
232 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
233 |
<xsd:element name="SequenceCoverage" type="Coverage" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
234 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
235 |
<xsd:documentation>This element describes the sequence coverage achieved for this identification.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
236 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
237 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
238 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
239 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
240 |
<xsd:complexType name="ReferenceType"> |
| 3008 |
17 Dec 08 |
olle |
241 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
242 |
<xsd:documentation>The ReferenceType element (abstract) provides an implementation of a simple link to n journal publications for which this experiment provides supporting evidence.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
243 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
244 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
245 |
<xsd:element name="RefLine" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
246 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
247 |
<xsd:documentation>The RefLine element (String) is a simple imlpementation of the literature article link, which should just contain the reference line for any supported articles. If more information is desired (and as PRIDE develops further) the ability to add additional information in a structured format has been added below.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
248 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
249 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
250 |
<xsd:element name="additional" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
251 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
252 |
<xsd:documentation>Subsidiary information about the reference; a run of additional parameters captured as name-value pairs</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
253 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
254 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
255 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
256 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The Peptide element definition; complex type again, note the presence of a Modification collection --> |
| 3008 |
17 Dec 08 |
olle |
258 |
<xsd:complexType name="Peptide"> |
| 3008 |
17 Dec 08 |
olle |
259 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
260 |
<xsd:documentation>The Peptide element (complex) holds details of each peptide that has been used to arrive at the identification above. In a future version of PRIDE it should be possible to include peptides that have not been linked to a protein.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
261 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
262 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
263 |
<xsd:element name="Sequence" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
264 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
265 |
<xsd:documentation>The sequence element (String) holds the expected sequence of the peptide identification.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
266 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
267 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
268 |
<xsd:element name="Start" type="xsd:nonNegativeInteger" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
269 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
270 |
<xsd:documentation>The Start element (Non-negative integer) holds the start position of the peptide in relation to the identified protein that this peptide has been used to identifiy.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
271 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
272 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
273 |
<xsd:element name="End" type="xsd:nonNegativeInteger" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
274 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
275 |
<xsd:documentation>The End element (Non-negative integer) holds the end position of the peptide in relation to the identified protein that this peptide has been used to identifiy.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
276 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
277 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
278 |
<xsd:element name="SpectrumReference" type="xsd:nonNegativeInteger" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
279 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
280 |
<xsd:documentation>The SpectrumReference (Non-negative Integer) cross references to the id attribute of the Spectrum element that contains the spectra used for this identification.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
281 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
282 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
283 |
<xsd:element name="ModificationItem" type="Modification" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
284 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
285 |
<xsd:documentation>The ModificationItem is the parent element (complex) that holds details of post transalational modifications. Any number of PTMs may be associated with a peptide.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
286 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
287 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
288 |
<xsd:element name="FragmentIon" type="FragmentIonType" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
289 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
290 |
<xsd:documentation>The Peptide element (complex) holds details of each peptide that has been used to arrive at the identification above. In a future version of PRIDE it should be possible to include peptides that have not been linked to a protein.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
291 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
292 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
293 |
<xsd:element name="additional" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
294 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
295 |
<xsd:documentation>Subsidiary information about the peptide; a run of additional parameters captured as name-value pairs</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
296 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
297 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
298 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
299 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
300 |
|
| 3008 |
17 Dec 08 |
olle |
<!-- The fragment ion type used in Peptide --> |
| 3008 |
17 Dec 08 |
olle |
302 |
<xsd:complexType name="FragmentIonType"> |
| 3008 |
17 Dec 08 |
olle |
303 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
304 |
<xsd:documentation>A placeholder for fragment ion parameters.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
305 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
306 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
307 |
<xsd:extension base="paramType"/> |
| 3008 |
17 Dec 08 |
olle |
308 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
309 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
310 |
|
| 3008 |
17 Dec 08 |
olle |
311 |
|
| 3008 |
17 Dec 08 |
olle |
<!-- The Start element definition; it is just a positive int --> |
| 3008 |
17 Dec 08 |
olle |
313 |
<xsd:complexType name="Modification"> |
| 3008 |
17 Dec 08 |
olle |
314 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
315 |
<xsd:documentation>The Modification element definition; complex type again, NOTE the fact that it cannot have a generated marshaller/unmarshaller for its data storage/reading! </xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
316 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
317 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
318 |
<xsd:element name="ModLocation" type="xsd:nonNegativeInteger" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
319 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
320 |
<xsd:documentation>The ModLocation element (Non-negative integer) indicates the position of the PTM in the peptide (parent element).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
321 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
322 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
323 |
<xsd:element name="ModAccession"> |
| 3008 |
17 Dec 08 |
olle |
324 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
325 |
<xsd:documentation>The ModAccessionelement definition (String) holds the accession number from the relevant post-translational modification database as indicated by in the ModDatabase element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
326 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
327 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
328 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
329 |
<xsd:minLength value="1"/> |
| 3008 |
17 Dec 08 |
olle |
330 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
331 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
332 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
333 |
<xsd:element name="ModDatabase" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
334 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
335 |
<xsd:documentation>The ModDatabase element definition (String) holds the name of the post-translational modification database used for this PTM.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
336 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
337 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
338 |
<xsd:element name="ModDatabaseVersion" type="xsd:string" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
339 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
340 |
<xsd:documentation>The ModDatabaseVersion element definition (String) holds version information about the post-translational modification database (if relevant).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
341 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
342 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
343 |
<xsd:element name="ModMonoDelta" type="xsd:string" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
344 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
345 |
<xsd:documentation>Any number of ModMonoDelta (String) values can be held as evidence for the post translational modification held in the parent element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
346 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
347 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
<!-- The ModAvgDelta element definition; it is just a String --> |
| 3008 |
17 Dec 08 |
olle |
349 |
<xsd:element name="ModAvgDelta" type="xsd:string" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
350 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
351 |
<xsd:documentation>Any number of ModAvgDelta (String) values can be held as evidence for the post translational modification held in the parent element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
352 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
353 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
354 |
<xsd:element name="additional" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
355 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
356 |
<xsd:documentation>Subsidiary information about the post translational modification; a run of additional parameters captured as name-value pairs</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
357 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
358 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
<!-- Note that these elements are not represented 'as is' in the UML diagram |
| 3008 |
17 Dec 08 |
olle |
(in fact, the mapping is to a Java HashMap, with residues as keys and a double[] |
| 3008 |
17 Dec 08 |
olle |
for the monoisotopic and average mass delta values, respectively). |
| 3008 |
17 Dec 08 |
olle |
They are programmatically extracted and their form should be something |
| 3008 |
17 Dec 08 |
olle |
like 'Xyyy.yy' where 'X' is the single-letter code for the affected residue |
| 3008 |
17 Dec 08 |
olle |
and 'yyy.yy' is the effective mass difference the modification causes for this |
| 3008 |
17 Dec 08 |
olle |
residue. --> |
| 3008 |
17 Dec 08 |
olle |
366 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
367 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
368 |
<xsd:complexType name="SimpleReference"> |
| 3008 |
17 Dec 08 |
olle |
369 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
370 |
<xsd:documentation>This is a concrete implementation of the abstract ReferenceType element and provides a very simple implementation of a link to any literature citations.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
371 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
372 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
373 |
<xsd:extension base="ReferenceType"/> |
| 3008 |
17 Dec 08 |
olle |
374 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
375 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The TwoDimensionalIdentification extension element of the Identification type --> |
| 3008 |
17 Dec 08 |
olle |
377 |
<xsd:complexType name="TwoDimensionalIdentificationType"> |
| 3008 |
17 Dec 08 |
olle |
378 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
379 |
<xsd:documentation>This is a concrete implementation of the abstract Identification element. This is used to represent identifications based upon 2D Gel Electrophoresis. Details of the gel, location of the spot, pI and molecular weight are included in this identification element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
380 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
381 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
382 |
<xsd:extension base="IdentificationType"> |
| 3008 |
17 Dec 08 |
olle |
383 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
384 |
<xsd:element name="Gel" type="SimpleGel" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
385 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
386 |
<xsd:documentation>The GelType (abstract) element provides a basis for describing the kind of gel used for this identication.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
387 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
388 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
389 |
<xsd:element name="GelLocation" type="Point" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
390 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
391 |
<xsd:documentation>This element indicates the absolute position of the spot on the 2D gel. (CLARIFY - Rf value?)</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
392 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
393 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
394 |
<xsd:element name="MolecularWeight" type="xsd:double" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
395 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
396 |
<xsd:documentation>Records the Molecular Weight (double) as estimated from the migration of the spot on the second dimention of the 2D gel.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
397 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
398 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
399 |
<xsd:element name="pI" type="xsd:double" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
400 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
401 |
<xsd:documentation>Records the pI (double) as estimated from the migration of the spot on the first dimention of the 2D gel.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
402 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
403 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
404 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
405 |
</xsd:extension> |
| 3008 |
17 Dec 08 |
olle |
406 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
407 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The Gel element; this is not even a type yet (only an interface, implementations follow)! |
| 3008 |
17 Dec 08 |
olle |
There are extended elements based on this one, please see below. --> |
| 3008 |
17 Dec 08 |
olle |
410 |
<xsd:complexType name="GelType" abstract="true"> |
| 3008 |
17 Dec 08 |
olle |
411 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
412 |
<xsd:documentation>The GelType (abstract) element provides a basis for describing the kind of gel used for this identication.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
413 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
414 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
415 |
<xsd:element name="GelLink" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
416 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
417 |
<xsd:documentation>This element provides a link (should this be a URI rather than a string?) to an image of the gel.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
418 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
419 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
420 |
<xsd:element name="additional" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
421 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
422 |
<xsd:documentation>Subsidiary information about the gel; a run of additional parameters captured as name-value pairs</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
423 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
424 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
425 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
426 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
427 |
<xsd:complexType name="Point"> |
| 3008 |
17 Dec 08 |
olle |
428 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
429 |
<xsd:documentation>Defines a coordinate system for describing the position of a spot on a gel.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
430 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
431 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
432 |
<xsd:element name="XCoordinate" type="xsd:double"> |
| 3008 |
17 Dec 08 |
olle |
433 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
434 |
<xsd:documentation>Defines the X coordinate (Double) (i.e. relative to the first dimension of the gel)</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
435 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
436 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
437 |
<xsd:element name="YCoordinate" type="xsd:double"> |
| 3008 |
17 Dec 08 |
olle |
438 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
439 |
<xsd:documentation>Defines the Y coordinate (Double) (i.e. relative to the second dimension of the gel)</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
440 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
441 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
442 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
443 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The MolecularWeight element; it is just a double --> |
| 3008 |
17 Dec 08 |
olle |
<!-- The pI element; it is just a double --> |
| 3008 |
17 Dec 08 |
olle |
446 |
<xsd:simpleType name="Coverage"> |
| 3008 |
17 Dec 08 |
olle |
447 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
448 |
<xsd:documentation>The Coverage element; it is just a constrained double (between (0.0-1.0), both inclusive) used to indicate the total sequence coverage of the identified protein.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
449 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
450 |
<xsd:restriction base="xsd:double"> |
| 3008 |
17 Dec 08 |
olle |
451 |
<xsd:minInclusive value="0.0"/> |
| 3008 |
17 Dec 08 |
olle |
452 |
<xsd:maxInclusive value="1.0"/> |
| 3008 |
17 Dec 08 |
olle |
453 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
454 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The GelFreeIdentification extension element of the Identification type --> |
| 3008 |
17 Dec 08 |
olle |
456 |
<xsd:complexType name="GelFreeIdentificationType"> |
| 3008 |
17 Dec 08 |
olle |
457 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
458 |
<xsd:documentation>The GelFreeIdentification element (complex) is a concrete implementation of the abstract IdentificationType element, used to hold details of identifications that have arisen from techniques other than gel eletrophoresis, for example LC-MS/MS.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
459 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
460 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
461 |
<xsd:extension base="IdentificationType"/> |
| 3008 |
17 Dec 08 |
olle |
462 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
463 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
<!-- The SimpleGel extension element of the Gel type --> |
| 3008 |
17 Dec 08 |
olle |
465 |
<xsd:complexType name="SimpleGel"> |
| 3008 |
17 Dec 08 |
olle |
466 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
467 |
<xsd:documentation>The SimpleGel element (complex) extends the GelType element to provide a concrete implementation of gel, holding a reference to a gel image (if available).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
468 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
469 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
470 |
<xsd:extension base="GelType"/> |
| 3008 |
17 Dec 08 |
olle |
471 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
472 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
473 |
<xsd:complexType name="sourceFileType"> |
| 3008 |
17 Dec 08 |
olle |
474 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
475 |
<xsd:documentation>Description of the source file, including location and type.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
476 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
477 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
478 |
<xsd:element name="nameOfFile" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
479 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
480 |
<xsd:documentation>Name of the source file, without reference to location (either URI or local path).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
481 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
482 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
483 |
<xsd:element name="pathToFile" type="xsd:anyURI"> |
| 3008 |
17 Dec 08 |
olle |
484 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
485 |
<xsd:documentation>URI-formatted full path to file, without actual file name appended.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
486 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
487 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
488 |
<xsd:element name="fileType" type="xsd:string" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
489 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
490 |
<xsd:documentation>Type of the file if appropriate, else a description of the software or reference resource used.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
491 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
492 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
493 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
494 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
495 |
<xsd:complexType name="supDataType"> |
| 3008 |
17 Dec 08 |
olle |
496 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
497 |
<xsd:documentation>Data type for additional data vectors (beyond m/z and intensity).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
498 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
499 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
500 |
<xsd:element name="arrayName" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
501 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
502 |
<xsd:documentation>Name of the supplemental data array.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
503 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
504 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
505 |
<xsd:choice> |
| 3008 |
17 Dec 08 |
olle |
506 |
<xsd:element name="float" type="xsd:float" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
507 |
<xsd:element name="double" type="xsd:double" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
508 |
<xsd:element name="int" type="xsd:int" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
509 |
<xsd:element name="boolean" type="xsd:boolean" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
510 |
<xsd:element name="string" type="xsd:string" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
511 |
<xsd:element name="time" type="xsd:float" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
512 |
<xsd:element name="URI" type="xsd:anyURI" maxOccurs="unbounded"/> |
| 3008 |
17 Dec 08 |
olle |
513 |
</xsd:choice> |
| 3008 |
17 Dec 08 |
olle |
514 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
515 |
<xsd:attribute name="id" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
516 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
517 |
<xsd:documentation>The value to which the supDataArrayRef attribute on suppDesc refers; values should never be shared between binary and non-binary supplemental arrays.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
518 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
519 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
520 |
<xsd:attribute name="length" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
521 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
522 |
<xsd:documentation>Number of items in the supDataArray.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
523 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
524 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
525 |
<xsd:attribute name="indexed" type="xsd:boolean" use="required"> |
| 3008 |
17 Dec 08 |
olle |
526 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
527 |
<xsd:documentation>Each supDataArray can either be related to the mzArray or not.If the elements are related to the mzArray then this flag is set to 1.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
528 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
529 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
530 |
<xsd:attribute name="offset" type="xsd:int" use="optional" default="0"> |
| 3008 |
17 Dec 08 |
olle |
531 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
532 |
<xsd:documentation>If the indexed flag is set, then this value gives the element count (starting from 1) in the mzArray which aligns with the first element in this supDataArray.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
533 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
534 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
535 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
536 |
<xsd:complexType name="cvLookupType"> |
| 3008 |
17 Dec 08 |
olle |
537 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
538 |
<xsd:documentation>Information about an ontology/CV source and a short 'lookup' tag to |
| 3008 |
17 Dec 08 |
olle |
539 |
refer to.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
540 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
541 |
<xsd:attribute name="cvLabel" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
542 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
543 |
<xsd:documentation>The short label to be used as a reference tag with which to refer to this particulart Controlled Vocabulary source description, from an instance of the cvLabel attribute, where it appears (i.e. in things of type paramType).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
544 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
545 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
546 |
<xsd:attribute name="fullName" type="xsd:string" use="optional"> |
| 3008 |
17 Dec 08 |
olle |
547 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
548 |
<xsd:documentation>The usual name for the resource (e.g. The MGED Ontology).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
549 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
550 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
551 |
<xsd:attribute name="version" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
552 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
553 |
<xsd:documentation>The version of the CV from which the referred-to terms are drawn.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
554 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
555 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
556 |
<xsd:attribute name="address" type="xsd:anyURI" use="required"> |
| 3008 |
17 Dec 08 |
olle |
557 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
558 |
<xsd:documentation>The URI for the resource.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
559 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
560 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
561 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
562 |
<xsd:complexType name="cvParamType"> |
| 3008 |
17 Dec 08 |
olle |
563 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
564 |
<xsd:documentation>Parameters from a controlled vocbulary.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
565 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
566 |
<xsd:attribute name="cvLabel" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
567 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
568 |
<xsd:documentation>The short tag for the resource as defined in cvLookupType.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
569 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
570 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
571 |
<xsd:attribute name="accession" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
572 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
573 |
<xsd:documentation>The accession number of the referred-to term in the named resource.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
574 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
575 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
576 |
<xsd:attribute name="name" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
577 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
578 |
<xsd:documentation>The actual name for the parameter, from the referred-to controlled vocabulary.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
579 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
580 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
581 |
<xsd:attribute name="value" type="xsd:string" use="optional"> |
| 3008 |
17 Dec 08 |
olle |
582 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
583 |
<xsd:documentation>The value for the parameter; may be absent if not appropriate, or a numeric or symbolic value, or may itself be CV (legal values for a parameter should be enumerated and defined in the ontology).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
584 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
585 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
586 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
587 |
<xsd:complexType name="personType"> |
| 3008 |
17 Dec 08 |
olle |
588 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
589 |
<xsd:documentation>Data type for operator identification information.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
590 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
591 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
592 |
<xsd:element name="name" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
593 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
594 |
<xsd:documentation>Contact person name, or role name (e.g. "Group leader of team 42") of the individual responsible for this dataset.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
595 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
596 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
597 |
<xsd:element name="institution" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
598 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
599 |
<xsd:documentation>Academic or corporate organisation with which the contact person or role is associated.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
600 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
601 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
602 |
<xsd:element name="contactInfo" type="xsd:string" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
603 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
604 |
<xsd:documentation>Phone number, email, postal address or other appropriate means of contact.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
605 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
606 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
607 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
608 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
609 |
<xsd:complexType name="softwareType"> |
| 3008 |
17 Dec 08 |
olle |
610 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
611 |
<xsd:documentation>Software information (the software that produced the peak list).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
612 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
613 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
614 |
<xsd:element name="name" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
615 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
616 |
<xsd:documentation>The official name for the software package used.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
617 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
618 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
619 |
<xsd:element name="version" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
620 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
621 |
<xsd:documentation>The version number of the software package.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
622 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
623 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
624 |
<xsd:element name="comments" type="xsd:string" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
625 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
626 |
<xsd:documentation>Additional comments on the use of the software.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
627 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
628 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
629 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
630 |
<xsd:attribute name="completionTime" type="xsd:dateTime" use="optional"> |
| 3008 |
17 Dec 08 |
olle |
631 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
632 |
<xsd:documentation>The time to complete the processing that resulted in this mzData file, if the mzData file was generated in a single use of the software (i.e. if the software was not used with more than one parameter set, not whether the job was completed in several phases).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
633 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
634 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
635 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
636 |
<xsd:complexType name="dataProcessingType"> |
| 3008 |
17 Dec 08 |
olle |
637 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
638 |
<xsd:documentation>Description of the software, and the way in which it was used to generate the peak list.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
639 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
640 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
641 |
<xsd:element name="software"> |
| 3008 |
17 Dec 08 |
olle |
642 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
643 |
<xsd:documentation>Specific information on the conversion or processing software.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
644 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
645 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
646 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
647 |
<xsd:extension base="softwareType"/> |
| 3008 |
17 Dec 08 |
olle |
648 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
649 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
650 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
651 |
<xsd:element name="processingMethod" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
652 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
653 |
<xsd:documentation>Description of the default peak processing method.This element describes the base method used in the generation of a particular mzData file. Variable methods should be described in the appropriate acquisition section -- if no acquisition-specific details are found, then this information serves as the default.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
654 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
655 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
656 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
657 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
658 |
<xsd:complexType name="spectrumType"> |
| 3008 |
17 Dec 08 |
olle |
659 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
660 |
<xsd:documentation>The structure tha captures the generation of a peak list (including |
| 3008 |
17 Dec 08 |
olle |
661 |
the underlying acquisitions)</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
662 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
663 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
664 |
<xsd:element name="spectrumDesc" type="spectrumDescType"> |
| 3008 |
17 Dec 08 |
olle |
665 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
666 |
<xsd:documentation>There is one spectrumDesc per spectrum. It captures both the instance-specific parameters for the underlying acquisitions, and where applicable, the postion of this spectrum in a possible hierarchy of spectra. For example, for 'tandem' mass spectrometry; the id attribute on the spectrum element allows the survey scan to be identified from which the parent ion was selected that gave rise to this MSMS spectrum -- note that these identifying numbers can be given, in a list if necessary, whether or not the actual referred-to spectra are present in the file -- they are the 'family tree' of this spectrum.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
667 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
668 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
669 |
<xsd:element name="supDesc" type="supDescType" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
670 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
671 |
<xsd:documentation>There is one supDesc for each supDataArray (binary or otherwise) found under this particular spectrum element.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
672 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
673 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
674 |
<xsd:element name="mzArrayBinary" type="peakListBinaryType"> |
| 3008 |
17 Dec 08 |
olle |
675 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
676 |
<xsd:documentation>The list of m/z values (for any type of spectrum). The array is stored as a base64 encoded binary.The only type allowed is IEEE-754 floating point; the precision must be specified as either 32- or 64-bit; endianess must also be specified.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
677 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
678 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
679 |
<xsd:element name="intenArrayBinary" type="peakListBinaryType"> |
| 3008 |
17 Dec 08 |
olle |
680 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
681 |
<xsd:documentation>The intensities for each member of the m/z array, also in base64 encoded binary as IEEE-754 floating point, with specified precision and endianess.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
682 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
683 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
684 |
<xsd:choice minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
685 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
686 |
<xsd:documentation>For each acquisition, there can be a mixture of binary and other data arrays. This is mostly to allow string and other data not conveniently handled by base64 to be associated with binary data. This [0..n] choice allows the number of arrays to be arbitrary.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
687 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
688 |
<xsd:element name="supDataArrayBinary" type="supDataBinaryType"> |
| 3008 |
17 Dec 08 |
olle |
689 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
690 |
<xsd:documentation>In addition to the m/z and intensity arrays, an arbitrary number of other arrays can be stored using the same indexing. For each array stored as base64 binary, precision and endianess must be specified.The only type allowed is IEEE-754 floating point (even booleans must be re-encoded this way).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
691 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
692 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
693 |
<xsd:element name="supDataArray" type="supDataType"> |
| 3008 |
17 Dec 08 |
olle |
694 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
695 |
<xsd:documentation>If the raw data representation method was not binary, or if the supplemental data array was a string or other non-binary type, then it can be represented in the supDataArray element (again with the same indexing).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
696 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
697 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
698 |
</xsd:choice> |
| 3008 |
17 Dec 08 |
olle |
699 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
700 |
<xsd:attribute name="id" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
701 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
702 |
<xsd:documentation>The identifier for a particular spectrum; to serve as both an internal (to the file) reference with which to order spectra and also to as a means to associate them with each other (e.g. parent and child soectra from a tandem experiment). This number should be provided whether it legitmately comes from the source data, or has to be generated. In the absence of a parent spectrum for an MS</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
703 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
704 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
705 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
706 |
<xsd:complexType name="supDataBinaryType"> |
| 3008 |
17 Dec 08 |
olle |
707 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
708 |
<xsd:documentation>Extension of binary data group for supplemental data</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
709 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
710 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
711 |
<xsd:element name="arrayName" type="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
712 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
713 |
<xsd:documentation>Name of the supplemental data array.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
714 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
715 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
716 |
<xsd:group ref="binaryDataGroup"/> |
| 3008 |
17 Dec 08 |
olle |
717 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
718 |
<xsd:attribute name="id" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
719 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
720 |
<xsd:documentation>The value to which the supDataArrayRef attribute on suppDesc refers; values should never be shared between binary and non-binary supplemental arrays.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
721 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
722 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
723 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
724 |
<xsd:complexType name="peakListBinaryType"> |
| 3008 |
17 Dec 08 |
olle |
725 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
726 |
<xsd:documentation>Extension of binary data group for m/z and intensity values</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
727 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
728 |
<xsd:group ref="binaryDataGroup"/> |
| 3008 |
17 Dec 08 |
olle |
729 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
730 |
<xsd:group name="binaryDataGroup"> |
| 3008 |
17 Dec 08 |
olle |
731 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
732 |
<xsd:documentation>The structure into which base64-encoded binary data go</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
733 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
734 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
735 |
<xsd:element name="data"> |
| 3008 |
17 Dec 08 |
olle |
736 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
737 |
<xsd:simpleContent> |
| 3008 |
17 Dec 08 |
olle |
738 |
<xsd:extension base="xsd:base64Binary"> |
| 3008 |
17 Dec 08 |
olle |
739 |
<xsd:attribute name="precision" use="required"> |
| 3008 |
17 Dec 08 |
olle |
740 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
741 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
742 |
<xsd:enumeration value="32"/> |
| 3008 |
17 Dec 08 |
olle |
743 |
<xsd:enumeration value="64"/> |
| 3008 |
17 Dec 08 |
olle |
744 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
745 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
746 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
747 |
<xsd:attribute name="endian" use="required"> |
| 3008 |
17 Dec 08 |
olle |
748 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
749 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
750 |
<xsd:enumeration value="big"/> |
| 3008 |
17 Dec 08 |
olle |
751 |
<xsd:enumeration value="little"/> |
| 3008 |
17 Dec 08 |
olle |
752 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
753 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
754 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
755 |
<xsd:attribute name="length" type="xsd:int" use="required"/> |
| 3008 |
17 Dec 08 |
olle |
756 |
</xsd:extension> |
| 3008 |
17 Dec 08 |
olle |
757 |
</xsd:simpleContent> |
| 3008 |
17 Dec 08 |
olle |
758 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
759 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
760 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
761 |
</xsd:group> |
| 3008 |
17 Dec 08 |
olle |
762 |
<xsd:complexType name="adminType"> |
| 3008 |
17 Dec 08 |
olle |
763 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
764 |
<xsd:documentation>'Header' information -- sample description, contact details, comments</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
765 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
766 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
767 |
<xsd:element name="sampleName"> |
| 3008 |
17 Dec 08 |
olle |
768 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
769 |
<xsd:documentation>A short label that is referable to the sample used to generate the dataset. This will often be a copy of the internal (lab) reference code for the sample being analysed.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
770 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
771 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
772 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
773 |
<xsd:minLength value="1"/> |
| 3008 |
17 Dec 08 |
olle |
774 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
775 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
776 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
777 |
<xsd:element name="sampleDescription" type="descriptionType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
778 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
779 |
<xsd:documentation>Expansible description of the sample used to generate the dataset, named in sampleName.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
780 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
781 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
782 |
<xsd:element name="sourceFile" type="sourceFileType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
783 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
784 |
<xsd:documentation>Information about the original source file (i.e. that generated by the instrument) used in generating the instance document.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
785 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
786 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
787 |
<xsd:element name="contact" type="personType" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
788 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
789 |
<xsd:documentation>Audit information concerning the means by which the originator/owner of this mzData file can be identified, and contacted if necessary.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
790 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
791 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
792 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
793 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
794 |
<xsd:complexType name="spectrumSettingsType"> |
| 3008 |
17 Dec 08 |
olle |
795 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
796 |
<xsd:documentation>Description of the parameters for the mass spectrometer for a given acquisition (or list of)</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
797 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
798 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
799 |
<xsd:element name="acqSpecification" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
800 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
801 |
<xsd:documentation>Specification for combining raw scans/acquisitions into a single peak list or spectrum. A list of acquisitions from the original raw file can be specified. Software parameters specified in the cv/userParams under acquisition automatically override the default parameters given in dataProcessing.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
802 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
803 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
804 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
805 |
<xsd:element name="acquisition" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
806 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
807 |
<xsd:documentation>Scan or acquisition from original raw file used to create this peak list, as specified in sourceFile.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
808 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
809 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
810 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
811 |
<xsd:extension base="paramType"> |
| 3008 |
17 Dec 08 |
olle |
812 |
<xsd:attribute name="acqNumber" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
813 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
814 |
<xsd:documentation>The actual acquisition number taken directly from the raw file.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
815 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
816 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
817 |
</xsd:extension> |
| 3008 |
17 Dec 08 |
olle |
818 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
819 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
820 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
821 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
822 |
<xsd:attribute name="spectrumType" use="required"> |
| 3008 |
17 Dec 08 |
olle |
823 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
824 |
<xsd:documentation>Whether these are discrete or continuous spectra.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
825 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
826 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
827 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
828 |
<xsd:enumeration value="discrete"/> |
| 3008 |
17 Dec 08 |
olle |
829 |
<xsd:enumeration value="continuous"/> |
| 3008 |
17 Dec 08 |
olle |
830 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
831 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
832 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
833 |
<xsd:attribute name="methodOfCombination" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
834 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
835 |
<xsd:documentation>The method (most usually summing or some form of averaging) by which the acquisitions were combined to make the spectrum.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
836 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
837 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
838 |
<xsd:attribute name="count" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
839 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
840 |
<xsd:documentation>The total number of acquisitions attached (as a simple data integrity check).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
841 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
842 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
843 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
844 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
845 |
<xsd:element name="spectrumInstrument"> |
| 3008 |
17 Dec 08 |
olle |
846 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
847 |
<xsd:documentation>The instrument's 'run time' parameters; common to the whole of this spectrum.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
848 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
849 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
850 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
851 |
<xsd:extension base="paramType"> |
| 3008 |
17 Dec 08 |
olle |
852 |
<xsd:attribute name="msLevel" type="xsd:int" use="required"/> |
| 3008 |
17 Dec 08 |
olle |
853 |
<xsd:attribute name="mzRangeStart" type="xsd:float" use="optional"/> |
| 3008 |
17 Dec 08 |
olle |
854 |
<xsd:attribute name="mzRangeStop" type="xsd:float" use="optional"/> |
| 3008 |
17 Dec 08 |
olle |
855 |
</xsd:extension> |
| 3008 |
17 Dec 08 |
olle |
856 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
857 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
858 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
859 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
860 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
861 |
<xsd:complexType name="precursorType"> |
| 3008 |
17 Dec 08 |
olle |
862 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
863 |
<xsd:documentation>The method of precursor ion selection and activation</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
864 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
865 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
866 |
<xsd:element name="ionSelection" type="paramType"> |
| 3008 |
17 Dec 08 |
olle |
867 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
868 |
<xsd:documentation>This captures the type of ion selection being performed, and trigger m/z (or m/z's), neutral loss criteria etc. for tandem MS or data dependent scans.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
869 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
870 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
871 |
<xsd:element name="activation" type="paramType"> |
| 3008 |
17 Dec 08 |
olle |
872 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
873 |
<xsd:documentation>The type and energy level used for activation.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
874 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
875 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
876 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
877 |
<xsd:attribute name="msLevel" type="xsd:int" use="required"/> |
| 3008 |
17 Dec 08 |
olle |
878 |
<xsd:attribute name="spectrumRef" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
879 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
880 |
<xsd:documentation>Reference to the id attribute of the spectrum from which the precursor was selected.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
881 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
882 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
883 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
884 |
<xsd:complexType name="spectrumDescType"> |
| 3008 |
17 Dec 08 |
olle |
885 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
886 |
<xsd:documentation>Description of the process of performing an acquisition</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
887 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
888 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
889 |
<xsd:element name="spectrumSettings" type="spectrumSettingsType"> |
| 3008 |
17 Dec 08 |
olle |
890 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
891 |
<xsd:documentation>Both run time instrument settings and variations in software parameters all leading to the generation of the specific spectrum being described.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
892 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
893 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
894 |
<xsd:element name="precursorList" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
895 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
896 |
<xsd:documentation>List and descriptions of precursors to the spectrum currently being described.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
897 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
898 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
899 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
900 |
<xsd:element name="precursor" type="precursorType" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
901 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
902 |
<xsd:documentation>This is the precursor step. If source activation is used then both msLevel and spectrumRef have the value 0. The spectrumRef holds the value of the id attrubute of the spectrum from which the precursor ion was selected. An ordered list of these precursors can be given; the referred-to id numbers my not represent spectra present in the mzData file, but this should not present a bar to providing the history of this scan. Example (trivially); MS survey scan has id = 1 and the first MSMS spectrum has id= 2, with the spectrumRef attribute on precursor for the MSMS spectrum having the value 1.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
903 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
904 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
905 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
906 |
<xsd:attribute name="count" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
907 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
908 |
<xsd:documentation>The number of precursor selection processes described in the attached list.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
909 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
910 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
911 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
912 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
913 |
<xsd:element name="comments" type="xsd:string" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
914 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
915 |
<xsd:documentation>Additional comments regarding the acquisition are captured here as free text. This should only be used as a lifeboat for when the cv/userParams are inappropriate; or as a 'scratch' comment space.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
916 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
917 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
918 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
919 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
920 |
<xsd:complexType name="supDescType"> |
| 3008 |
17 Dec 08 |
olle |
921 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
922 |
<xsd:documentation>Description of a supplemental data array</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
923 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
924 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
925 |
<xsd:element name="supDataDesc" type="descriptionType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
926 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
927 |
<xsd:documentation>Description of the supplemental dataset, in both CV and free-text.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
928 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
929 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
930 |
<xsd:element name="supSourceFile" type="sourceFileType" minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
931 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
932 |
<xsd:documentation>Information about the original source file used to generate the supDataArray.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
933 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
934 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
935 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
936 |
<xsd:attribute name="supDataArrayRef" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
937 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
938 |
<xsd:documentation>Reference to the id attribute of the supplemental data array/binary.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
939 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
940 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
941 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
942 |
<xsd:complexType name="instrumentDescriptionType"> |
| 3008 |
17 Dec 08 |
olle |
943 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
944 |
<xsd:documentation>Description of the components of the mass spectrometer used</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
945 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
946 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
947 |
<xsd:element name="instrumentName"> |
| 3008 |
17 Dec 08 |
olle |
948 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
949 |
<xsd:documentation>Descriptive name of the instrument (make, model, significant customisations).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
950 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
951 |
<xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
952 |
<xsd:restriction base="xsd:string"> |
| 3008 |
17 Dec 08 |
olle |
953 |
<xsd:minLength value="1"/> |
| 3008 |
17 Dec 08 |
olle |
954 |
</xsd:restriction> |
| 3008 |
17 Dec 08 |
olle |
955 |
</xsd:simpleType> |
| 3008 |
17 Dec 08 |
olle |
956 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
957 |
<xsd:element name="source" type="paramType"> |
| 3008 |
17 Dec 08 |
olle |
958 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
959 |
<xsd:documentation>Invariant ion source (e.g. MALDI) information, as a run of name-value pairs.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
960 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
961 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
962 |
<xsd:element name="analyzerList"> |
| 3008 |
17 Dec 08 |
olle |
963 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
964 |
<xsd:documentation>Mass analyzer component list; ordered so as to reflect the physical order of the desribed components in the mass spectrometer.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
965 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
966 |
<xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
967 |
<xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
968 |
<xsd:element name="analyzer" type="paramType" minOccurs="1" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
969 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
970 |
<xsd:documentation>A single component of the mass analyzer (e.g. quadrupole, collision cell), decribed with a run of name-value pairs.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
971 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
972 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
973 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
974 |
<xsd:attribute name="count" type="xsd:int" use="required"> |
| 3008 |
17 Dec 08 |
olle |
975 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
976 |
<xsd:documentation>The number of analyzers that are described in the attached list.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
977 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
978 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
979 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
980 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
981 |
<xsd:element name="detector" type="paramType"> |
| 3008 |
17 Dec 08 |
olle |
982 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
983 |
<xsd:documentation>Ion detector information, as a run of name-value pairs.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
984 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
985 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
986 |
<xsd:element name="additional" type="paramType" minOccurs="0"> |
| 3008 |
17 Dec 08 |
olle |
987 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
988 |
<xsd:documentation>Subsidiary information about the instrument; a run of additional parameters captured as name-value pairs</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
989 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
990 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
991 |
</xsd:sequence> |
| 3008 |
17 Dec 08 |
olle |
992 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
993 |
<xsd:complexType name="paramType"> |
| 3008 |
17 Dec 08 |
olle |
994 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
995 |
<xsd:documentation>Structure allowing the use of controlled or uncontrolled vocabulary</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
996 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
997 |
<xsd:choice minOccurs="0" maxOccurs="unbounded"> |
| 3008 |
17 Dec 08 |
olle |
998 |
<xsd:element name="cvParam" type="cvParamType"> |
| 3008 |
17 Dec 08 |
olle |
999 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1000 |
<xsd:documentation>This element holds additional data or annotation. Only controlled values are allowed here.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1001 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1002 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
1003 |
<xsd:element name="userParam" type="userParamType"> |
| 3008 |
17 Dec 08 |
olle |
1004 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1005 |
<xsd:documentation>This element holds additional data or annotation. Uncontrolled, or user controlled values are allowed here.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1006 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1007 |
</xsd:element> |
| 3008 |
17 Dec 08 |
olle |
1008 |
</xsd:choice> |
| 3008 |
17 Dec 08 |
olle |
1009 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
1010 |
<xsd:complexType name="userParamType"> |
| 3008 |
17 Dec 08 |
olle |
1011 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1012 |
<xsd:documentation>Uncontrolled user parameters (vocabulary).</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1013 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1014 |
<xsd:attribute name="name" type="xsd:string" use="required"> |
| 3008 |
17 Dec 08 |
olle |
1015 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1016 |
<xsd:documentation>The actual name for the parameter.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1017 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1018 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
1019 |
<xsd:attribute name="value" type="xsd:string" use="optional"> |
| 3008 |
17 Dec 08 |
olle |
1020 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1021 |
<xsd:documentation>The value for the parameter, where appropriate.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1022 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1023 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
1024 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
1025 |
<xsd:complexType name="descriptionType"> |
| 3008 |
17 Dec 08 |
olle |
1026 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1027 |
<xsd:documentation>Extension of 'paramType' with an added free-text comment attribute.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1028 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1029 |
<xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
1030 |
<xsd:extension base="paramType"> |
| 3008 |
17 Dec 08 |
olle |
1031 |
<xsd:attribute name="comment" type="xsd:string" use="optional"> |
| 3008 |
17 Dec 08 |
olle |
1032 |
<xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1033 |
<xsd:documentation>Free text opportunity to supplement, but not to replace, to the main CV-based description.</xsd:documentation> |
| 3008 |
17 Dec 08 |
olle |
1034 |
</xsd:annotation> |
| 3008 |
17 Dec 08 |
olle |
1035 |
</xsd:attribute> |
| 3008 |
17 Dec 08 |
olle |
1036 |
</xsd:extension> |
| 3008 |
17 Dec 08 |
olle |
1037 |
</xsd:complexContent> |
| 3008 |
17 Dec 08 |
olle |
1038 |
</xsd:complexType> |
| 3008 |
17 Dec 08 |
olle |
1039 |
</xsd:schema> |