| ../ |
| BamFile.cc |
457 (100%) |
323 (100%) |
52 (100%) |
82 (100%) |
4359 |
peter |
| BamFile.h |
502 (100%) |
191 (100%) |
135 (100%) |
176 (100%) |
3999 |
peter |
| BamHeader.cc |
483 (100%) |
349 (100%) |
55 (100%) |
79 (100%) |
4359 |
peter |
| BamHeader.h |
382 (100%) |
94 (100%) |
137 (100%) |
151 (100%) |
4359 |
peter |
| BamPair.cc |
98 (100%) |
48 (100%) |
17 (100%) |
33 (100%) |
4089 |
peter |
| BamPair.h |
131 (100%) |
34 (100%) |
40 (100%) |
57 (100%) |
4089 |
peter |
| BamPairBuffer.h |
80 (100%) |
26 (100%) |
30 (100%) |
24 (100%) |
4057 |
peter |
| BamPairIterator.h |
305 (100%) |
172 (100%) |
71 (100%) |
62 (100%) |
4089 |
peter |
| BamPairIterator2.h |
285 (100%) |
163 (100%) |
56 (100%) |
66 (100%) |
4057 |
peter |
| BamRead.cc |
803 (100%) |
566 (100%) |
70 (100%) |
167 (100%) |
4359 |
peter |
| BamRead.h |
814 (100%) |
208 (100%) |
295 (100%) |
311 (100%) |
4359 |
peter |
| BamReadFilter.cc |
53 (100%) |
21 (100%) |
17 (100%) |
15 (100%) |
4359 |
peter |
| BamReadFilter.h |
98 (100%) |
32 (100%) |
41 (100%) |
25 (100%) |
4359 |
peter |
| BamReadIterator.cc |
315 (100%) |
206 (100%) |
37 (100%) |
72 (100%) |
4359 |
peter |
| BamReadIterator.h |
265 (100%) |
97 (100%) |
100 (100%) |
68 (100%) |
4359 |
peter |
| BamReadSequenceIterator.cc |
136 (100%) |
80 (100%) |
14 (100%) |
42 (100%) |
4345 |
peter |
| BamReadSequenceIterator.h |
126 (100%) |
48 (100%) |
33 (100%) |
45 (100%) |
4345 |
peter |
| BamRegion.cc |
70 (100%) |
33 (100%) |
13 (100%) |
24 (100%) |
4272 |
peter |
| BamRegion.h |
90 (100%) |
25 (100%) |
28 (100%) |
37 (100%) |
4275 |
peter |
| BamWriteIterator.cc |
85 (100%) |
28 (100%) |
29 (100%) |
28 (100%) |
3999 |
peter |
| BamWriteIterator.h |
138 (100%) |
33 (100%) |
60 (100%) |
45 (100%) |
4359 |
peter |
| Codon.cc |
304 (100%) |
244 (100%) |
20 (100%) |
40 (100%) |
4089 |
peter |
| Codon.h |
188 (100%) |
51 (100%) |
74 (100%) |
63 (100%) |
4359 |
peter |
| DNA.cc |
255 (100%) |
188 (100%) |
21 (100%) |
46 (100%) |
4245 |
peter |
| DNA.h |
197 (100%) |
39 (100%) |
87 (100%) |
71 (100%) |
4245 |
peter |
| DnaComplementer.cc |
72 (100%) |
28 (100%) |
27 (100%) |
17 (100%) |
4346 |
peter |
| DnaComplementer.h |
67 (100%) |
11 (100%) |
35 (100%) |
21 (100%) |
4346 |
peter |
| Fasta.cc |
299 (100%) |
201 (100%) |
48 (100%) |
50 (100%) |
4359 |
peter |
| Fasta.h |
199 (100%) |
54 (100%) |
70 (100%) |
75 (100%) |
4346 |
peter |
| GFF.cc |
195 (100%) |
129 (100%) |
22 (100%) |
44 (100%) |
3875 |
peter |
| GFF.h |
156 (100%) |
39 (100%) |
47 (100%) |
70 (100%) |
3114 |
peter |
| GFF2.cc |
70 (100%) |
34 (100%) |
23 (100%) |
13 (100%) |
4252 |
peter |
| GFF2.h |
51 (100%) |
13 (100%) |
21 (100%) |
17 (100%) |
4359 |
peter |
| GFF3.cc |
56 (100%) |
25 (100%) |
16 (100%) |
15 (100%) |
4252 |
peter |
| GFF3.h |
49 (100%) |
15 (100%) |
17 (100%) |
17 (100%) |
3114 |
peter |
| GenomicPosition.cc |
111 (100%) |
59 (100%) |
18 (100%) |
34 (100%) |
4359 |
peter |
| GenomicPosition.h |
156 (100%) |
28 (100%) |
64 (100%) |
64 (100%) |
4359 |
peter |
| Makefile |
21 (100%) |
2 (100%) |
13 (100%) |
6 (100%) |
2824 |
peter |
| Makefile.am |
133 (100%) |
96 (100%) |
24 (100%) |
13 (100%) |
4359 |
peter |
| Pileup.h |
625 (100%) |
347 (100%) |
125 (100%) |
153 (100%) |
4019 |
peter |
| VCF.cc |
844 (100%) |
637 (100%) |
37 (100%) |
170 (100%) |
4359 |
peter |
| VCF.h |
850 (100%) |
356 (100%) |
197 (100%) |
297 (100%) |
4316 |
peter |
| VcfCompare.cc |
82 (100%) |
48 (100%) |
12 (100%) |
22 (100%) |
3759 |
peter |
| VcfCompare.h |
76 (100%) |
21 (100%) |
28 (100%) |
27 (100%) |
4359 |
peter |
| VcfFile.cc |
155 (100%) |
91 (100%) |
26 (100%) |
38 (100%) |
4089 |
peter |
| VcfFile.h |
150 (100%) |
46 (100%) |
48 (100%) |
56 (100%) |
4207 |
peter |
| VcfHeader.cc |
410 (100%) |
316 (100%) |
17 (100%) |
77 (100%) |
4308 |
peter |
| VcfHeader.h |
211 (100%) |
54 (100%) |
72 (100%) |
85 (100%) |
3999 |
peter |
| VcfIterator.cc |
42 (100%) |
14 (100%) |
13 (100%) |
15 (100%) |
3774 |
peter |
| VcfIterator.h |
69 (100%) |
17 (100%) |
28 (100%) |
24 (100%) |
3774 |
peter |
| algorithm.h |
300 (100%) |
142 (100%) |
97 (100%) |
61 (100%) |
3999 |
peter |
| config_bam.h |
120 (100%) |
52 (100%) |
49 (100%) |
19 (100%) |
4346 |
peter |
| hts.cc |
248 (100%) |
135 (100%) |
59 (100%) |
54 (100%) |
4278 |
peter |
| phred.cc |
43 (100%) |
15 (100%) |
13 (100%) |
15 (100%) |
3325 |
peter |
| phred.h |
55 (100%) |
9 (100%) |
23 (100%) |
23 (100%) |
3326 |
peter |
| Total |
12575 (100%) |
6333 (100%) |
2821 (100%) |
3421 (100%) |
4359 |
peter |
![[plot]](../../../../../add/images/total/yat/omic/index.png)