yat/yat/omic

[plot]

File Summary for peter

Node Lines Code Comments Other Revision Author
../
BamFile.cc 266 (100%) 181 (100%) 19 (100%) 66 (100%) 4359 peter
BamFile.h 426 (100%) 151 (100%) 103 (100%) 172 (100%) 3999 peter
BamHeader.cc 311 (100%) 220 (100%) 21 (100%) 70 (100%) 4359 peter
BamHeader.h 316 (100%) 73 (100%) 102 (100%) 141 (100%) 4359 peter
BamPair.cc 95 (100%) 48 (100%) 14 (100%) 33 (100%) 4089 peter
BamPair.h 128 (100%) 34 (100%) 37 (100%) 57 (100%) 4089 peter
BamPairBuffer.h 80 (100%) 26 (100%) 30 (100%) 24 (100%) 4057 peter
BamPairIterator.h 247 (100%) 130 (100%) 57 (100%) 60 (100%) 4089 peter
BamPairIterator2.h 275 (100%) 154 (100%) 55 (100%) 66 (100%) 4057 peter
BamRead.cc 562 (100%) 371 (100%) 42 (100%) 149 (100%) 4359 peter
BamRead.h 642 (100%) 152 (100%) 206 (100%) 284 (100%) 4359 peter
BamReadFilter.cc 48 (100%) 20 (100%) 13 (100%) 15 (100%) 4359 peter
BamReadFilter.h 87 (100%) 26 (100%) 36 (100%) 25 (100%) 4359 peter
BamReadIterator.cc 242 (100%) 159 (100%) 18 (100%) 65 (100%) 4359 peter
BamReadIterator.h 212 (100%) 72 (100%) 77 (100%) 63 (100%) 4359 peter
BamReadSequenceIterator.cc 136 (100%) 80 (100%) 14 (100%) 42 (100%) 4345 peter
BamReadSequenceIterator.h 126 (100%) 48 (100%) 33 (100%) 45 (100%) 4345 peter
BamRegion.cc 70 (100%) 33 (100%) 13 (100%) 24 (100%) 4272 peter
BamRegion.h 90 (100%) 25 (100%) 28 (100%) 37 (100%) 4275 peter
BamWriteIterator.cc 61 (100%) 25 (100%) 13 (100%) 23 (100%) 3999 peter
BamWriteIterator.h 111 (100%) 30 (100%) 40 (100%) 41 (100%) 4359 peter
Codon.cc 244 (100%) 195 (100%) 13 (100%) 36 (100%) 4089 peter
Codon.h 159 (100%) 43 (100%) 63 (100%) 53 (100%) 4359 peter
DNA.cc 163 (100%) 111 (100%) 15 (100%) 37 (100%) 4245 peter
DNA.h 172 (100%) 31 (100%) 76 (100%) 65 (100%) 4245 peter
DnaComplementer.cc 53 (100%) 27 (100%) 13 (100%) 13 (100%) 4346 peter
DnaComplementer.h 47 (100%) 11 (100%) 19 (100%) 17 (100%) 4346 peter
Fasta.cc 193 (100%) 128 (100%) 22 (100%) 43 (100%) 4359 peter
Fasta.h 167 (100%) 44 (100%) 54 (100%) 69 (100%) 4346 peter
GFF.cc 173 (100%) 114 (100%) 19 (100%) 40 (100%) 3875 peter
GFF.h 153 (100%) 39 (100%) 45 (100%) 69 (100%) 3114 peter
GFF2.cc 58 (100%) 27 (100%) 18 (100%) 13 (100%) 4252 peter
GFF2.h 45 (100%) 13 (100%) 16 (100%) 16 (100%) 4359 peter
GFF3.cc 50 (100%) 23 (100%) 13 (100%) 14 (100%) 4252 peter
GFF3.h 46 (100%) 15 (100%) 15 (100%) 16 (100%) 3114 peter
GenomicPosition.cc 97 (100%) 53 (100%) 12 (100%) 32 (100%) 4359 peter
GenomicPosition.h 145 (100%) 27 (100%) 57 (100%) 61 (100%) 4359 peter
Makefile 20 (100%) 1 (100%) 13 (100%) 6 (100%) 2824 peter
Makefile.am 75 (100%) 55 (100%) 13 (100%) 7 (100%) 4359 peter
Pileup.h 442 (100%) 211 (100%) 92 (100%) 139 (100%) 4019 peter
VCF.cc 757 (100%) 563 (100%) 26 (100%) 168 (100%) 4359 peter
VCF.h 756 (100%) 308 (100%) 166 (100%) 282 (100%) 4316 peter
VcfCompare.cc 82 (100%) 48 (100%) 12 (100%) 22 (100%) 3759 peter
VcfCompare.h 73 (100%) 21 (100%) 25 (100%) 27 (100%) 4359 peter
VcfFile.cc 148 (100%) 88 (100%) 22 (100%) 38 (100%) 4089 peter
VcfFile.h 128 (100%) 33 (100%) 42 (100%) 53 (100%) 4207 peter
VcfHeader.cc 357 (100%) 274 (100%) 12 (100%) 71 (100%) 4308 peter
VcfHeader.h 207 (100%) 54 (100%) 68 (100%) 85 (100%) 3999 peter
VcfIterator.cc 42 (100%) 14 (100%) 13 (100%) 15 (100%) 3774 peter
VcfIterator.h 69 (100%) 17 (100%) 28 (100%) 24 (100%) 3774 peter
algorithm.h 197 (100%) 76 (100%) 70 (100%) 51 (100%) 3999 peter
config_bam.h 53 (100%) 12 (100%) 26 (100%) 15 (100%) 4346 peter
hts.cc 248 (100%) 135 (100%) 59 (100%) 54 (100%) 4278 peter
phred.cc 43 (100%) 15 (100%) 13 (100%) 15 (100%) 3325 peter
phred.h 54 (100%) 9 (100%) 22 (100%) 23 (100%) 3326 peter
Total 10247 (100%) 4893 (100%) 2163 (100%) 3191 (100%) 4359 peter

Author Summary

Author Lines Code Comments Other Revision Date
peter1024748932163319143592023-08-23  01:28
Total 10247 4893 2163 3191 4359 2023-08-23  01:28