2 |
19 Feb 03 |
jari |
$Id$ |
675 |
10 Oct 06 |
jari |
2 |
|
905 |
27 Sep 07 |
peter |
See the end of this file for copyrights and conditions. |
905 |
27 Sep 07 |
peter |
4 |
|
4361 |
23 Aug 23 |
peter |
version 0.22 (released NOT YET) |
4361 |
23 Aug 23 |
peter |
6 |
|
4361 |
23 Aug 23 |
peter |
A complete list of closed tickets can be found here [[br]] |
4361 |
23 Aug 23 |
peter |
https://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.22 |
4361 |
23 Aug 23 |
peter |
9 |
|
4358 |
23 Aug 23 |
peter |
yat 0.21.x series from https://dev.thep.lu.se/yat/svn/branches/0.21-stable |
4358 |
23 Aug 23 |
peter |
11 |
|
4378 |
11 Oct 23 |
peter |
version 0.21 (released 11 October 2023) |
4339 |
15 Apr 23 |
peter |
- A number of classes no longer inherit from std::unary_function (or |
4339 |
15 Apr 23 |
peter |
std::binary_function), but typedef argument_type |
4339 |
15 Apr 23 |
peter |
(first_argument_type or second_argument_type) and result_type |
4339 |
15 Apr 23 |
peter |
itself instead (ticket #998). |
4276 |
25 Jan 23 |
peter |
- htslib 1.10 (or newer) is now required (ticket #991) |
4279 |
26 Jan 23 |
peter |
- GSL 2.2 (or newer) is now required (ticket #983) |
4326 |
12 Mar 23 |
peter |
- YAT_AC_WRITE has been replaced by YAT_AC_WRITE_TO_FILE |
4326 |
12 Mar 23 |
peter |
- YAT_AC_WRITE_APPEND has been replaced by YAT_AC_APPEND_TO_FILE |
4209 |
26 Aug 22 |
peter |
21 |
|
4209 |
26 Aug 22 |
peter |
A complete list of closed tickets can be found here [[br]] |
4209 |
26 Aug 22 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.21 |
4209 |
26 Aug 22 |
peter |
24 |
|
4206 |
26 Aug 22 |
peter |
yat 0.20.x series from http://dev.thep.lu.se/yat/svn/branches/0.20-stable |
4206 |
26 Aug 22 |
peter |
26 |
|
4316 |
17 Feb 23 |
peter |
version 0.20.2 (released 17 February 2023) |
4316 |
17 Feb 23 |
peter |
- Fixed bug in VCF::Info::set(2) (bug #995) |
4316 |
17 Feb 23 |
peter |
29 |
|
4316 |
17 Feb 23 |
peter |
A complete list of closed tickets can be found here [[br]] |
4316 |
17 Feb 23 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.20.2 |
4316 |
17 Feb 23 |
peter |
32 |
|
4308 |
10 Feb 23 |
peter |
version 0.20.1 (released 10 February 2023) |
4308 |
10 Feb 23 |
peter |
- Aligner::needleman_wunsch and NeedlemanWunsch functions were |
4308 |
10 Feb 23 |
peter |
previously buggy for non-zero gap penalties (bug #993) |
4308 |
10 Feb 23 |
peter |
- VcfHeaer::add_program_command now outputs Date (bug #994) |
4308 |
10 Feb 23 |
peter |
37 |
|
4308 |
10 Feb 23 |
peter |
A complete list of closed tickets can be found here [[br]] |
4308 |
10 Feb 23 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.20.1 |
4308 |
10 Feb 23 |
peter |
40 |
|
4252 |
18 Nov 22 |
peter |
version 0.20 (released 18 November 2022) |
4252 |
18 Nov 22 |
peter |
- Boost 1.66 (or newer) is now required (see r4228) |
4097 |
17 Sep 21 |
peter |
- utility::replace(3) now takes const string& rather than string |
4186 |
04 Jul 22 |
peter |
- normalizer::QuantileNormalizer is deprecated; use |
4186 |
04 Jul 22 |
peter |
QuantileNormalizer2 instead (ticket #984) |
4091 |
07 Sep 21 |
peter |
46 |
|
4091 |
07 Sep 21 |
peter |
A complete list of closed tickets can be found here [[br]] |
4091 |
07 Sep 21 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.20 |
4091 |
07 Sep 21 |
peter |
49 |
|
4088 |
07 Sep 21 |
peter |
yat 0.19.x series from http://dev.thep.lu.se/yat/svn/branches/0.19-stable |
4088 |
07 Sep 21 |
peter |
51 |
|
4204 |
26 Aug 22 |
peter |
version 0.19.2 (released 26 August 2022) |
4204 |
26 Aug 22 |
peter |
- Bug fixed in Scheduler when two exception was thrown (see r4167) |
4204 |
26 Aug 22 |
peter |
54 |
|
4204 |
26 Aug 22 |
peter |
A complete list of closed tickets can be found here [[br]] |
4204 |
26 Aug 22 |
peter |
https://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.19.2 |
4204 |
26 Aug 22 |
peter |
57 |
|
4164 |
13 Mar 22 |
peter |
version 0.19.1 (released 13 March 2022) |
4164 |
13 Mar 22 |
peter |
- Several bugs in Scheduler have been fixed (#980, #981, #982) |
4164 |
13 Mar 22 |
peter |
60 |
|
4164 |
13 Mar 22 |
peter |
A complete list of closed tickets can be found here [[br]] |
4164 |
13 Mar 22 |
peter |
https://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.19.1 |
4164 |
13 Mar 22 |
peter |
63 |
|
4110 |
27 Sep 21 |
peter |
version 0.19 (released 27 September 2021) |
4051 |
04 Mar 21 |
peter |
- classifier::Target::labels(void) is now const (issue #972) |
4054 |
26 Mar 21 |
peter |
- statistics::correlation now takes a const Matrix& instead of Matrix |
4001 |
08 Oct 20 |
peter |
67 |
|
4001 |
08 Oct 20 |
peter |
A complete list of closed tickets can be found here [[br]] |
4001 |
08 Oct 20 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.19 |
4001 |
08 Oct 20 |
peter |
70 |
|
3998 |
08 Oct 20 |
peter |
yat 0.18.x series from http://dev.thep.lu.se/yat/svn/branches/0.18-stable |
3998 |
08 Oct 20 |
peter |
72 |
|
4032 |
21 Jan 21 |
peter |
version 0.18.1 (released 21 January 2021) |
4032 |
21 Jan 21 |
peter |
- SegmentTree::key_comp() and ::value_comp() now compile (bug #970). |
4032 |
21 Jan 21 |
peter |
75 |
|
4032 |
21 Jan 21 |
peter |
A complete list of closed tickets can be found here [[br]] |
4032 |
21 Jan 21 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.18.1 |
4032 |
21 Jan 21 |
peter |
78 |
|
4019 |
06 Nov 20 |
peter |
version 0.18 (released 6 November 2020) |
3980 |
24 Aug 20 |
peter |
- regression::NegativeBinomial now inherits from |
3980 |
24 Aug 20 |
peter |
regression::Multivariate (ticket #957) |
3938 |
16 Jul 20 |
peter |
- yat now requires a c++11 compliant compiler (ticket #949) |
3922 |
07 Jun 20 |
peter |
- yat now requires GSL 1.13 or later (ticket #945) |
3883 |
24 Mar 20 |
peter |
- Building against libbam is no longer supported (ticket #939) |
3960 |
01 Aug 20 |
peter |
- libyat is no longer linked against libboost_system and |
3960 |
01 Aug 20 |
peter |
libboost_thread (ticket #953) |
3960 |
01 Aug 20 |
peter |
- macro YAT_HAVE_WORKING_BOOST_EXCEPTION_PTR is no longer #defined |
3960 |
01 Aug 20 |
peter |
in yat/utility/config_public.h (ticket #953) |
3938 |
16 Jul 20 |
peter |
- configure option --disable-cxx11 is no longer supported (ticket #949) |
3911 |
17 May 20 |
peter |
- configure option --without-samtools is no longer supported; use |
3883 |
24 Mar 20 |
peter |
--without-htslib |
3883 |
24 Mar 20 |
peter |
- Autoconf macro YAT_CHECK_HTSLIB is no longer looking for libbam or |
3883 |
24 Mar 20 |
peter |
header files from the samtools API (ticket #939) |
3911 |
17 May 20 |
peter |
- protected function BamFile::open_base(3) is deprecated, use open_base(2). |
3857 |
02 Jan 20 |
peter |
95 |
|
3857 |
02 Jan 20 |
peter |
A complete list of closed tickets can be found here [[br]] |
3857 |
02 Jan 20 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.18 |
3857 |
02 Jan 20 |
peter |
98 |
|
3854 |
02 Jan 20 |
peter |
yat 0.17.x series from http://dev.thep.lu.se/yat/svn/branches/0.17-stable |
3854 |
02 Jan 20 |
peter |
100 |
|
3987 |
26 Aug 20 |
peter |
version 0.17.2 (released 26 August 2020) |
3987 |
26 Aug 20 |
peter |
- Fixed bug in Kendall::p_value() that caused overstimation when |
3987 |
26 Aug 20 |
peter |
both variables contained triplets (see bug #955) |
3987 |
26 Aug 20 |
peter |
- VectorMutable::all(double) now works on zero-sized vector, which |
3987 |
26 Aug 20 |
peter |
means that Vector::resize(0) now works on a zero-sized vector (bug |
3987 |
26 Aug 20 |
peter |
#956) |
3966 |
11 Aug 20 |
peter |
- Generating documentation now works with Doxygen 1.8.19 (bug #954) |
3966 |
11 Aug 20 |
peter |
- GSL, HTSLIB, Boost.Thread and Boost.System are not declated private |
3966 |
11 Aug 20 |
peter |
in pkg-config file yat.pc (bug #952). |
3966 |
11 Aug 20 |
peter |
110 |
|
3966 |
11 Aug 20 |
peter |
A complete list of closed tickets can be found here [[br]] |
3966 |
11 Aug 20 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.17.2 |
3966 |
11 Aug 20 |
peter |
113 |
|
3930 |
08 Jul 20 |
peter |
version 0.17.1 (released 8 July 2020) |
3930 |
08 Jul 20 |
peter |
- getvector(istream& is, vector<double>& vec) now clears the passed |
3930 |
08 Jul 20 |
peter |
vector before populating it with values from istream. Same |
3930 |
08 Jul 20 |
peter |
behaviour as getvector(istream, vector<string>&> and |
3930 |
08 Jul 20 |
peter |
std::getline(istream&, string&) (Bug #947) |
3893 |
27 Mar 20 |
peter |
- Fixed ambiguous DiscreteUniform::result_type (bug #942) |
3893 |
27 Mar 20 |
peter |
120 |
|
3893 |
27 Mar 20 |
peter |
A complete list of closed tickets can be found here [[br]] |
3893 |
27 Mar 20 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.17.1 |
3893 |
27 Mar 20 |
peter |
123 |
|
3875 |
05 Mar 20 |
peter |
version 0.17 (released 5 March 2020) |
3870 |
24 Feb 20 |
peter |
- Class Percentiler and functions using the class (percentile2, |
3870 |
24 Feb 20 |
peter |
median, and mad) are now documented to require lvalue access (see |
3870 |
24 Feb 20 |
peter |
bug #935) |
3804 |
12 May 19 |
peter |
- cxx11 features are now available also when YAT_WITH_CXX11 is not |
3804 |
12 May 19 |
peter |
defined; user can still turn off cxx11 features with |
3805 |
13 May 19 |
peter |
YAT_WITHOUT_CXX11 (ticket #904) |
3796 |
12 Apr 19 |
peter |
131 |
|
3796 |
12 Apr 19 |
peter |
A complete list of closed tickets can be found here [[br]] |
3796 |
12 Apr 19 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.17 |
3796 |
12 Apr 19 |
peter |
134 |
|
3793 |
12 Apr 19 |
peter |
yat 0.16.x series from http://dev.thep.lu.se/yat/svn/branches/0.16-stable |
3793 |
12 Apr 19 |
peter |
136 |
|
3851 |
12 Dec 19 |
peter |
version 0.16.3 (released 12 December 2019) |
3851 |
12 Dec 19 |
peter |
- fixed a bug in Scheduler::Jobs (ticket #931) |
3851 |
12 Dec 19 |
peter |
139 |
|
3851 |
12 Dec 19 |
peter |
A complete list of closed tickets can be found here [[br]] |
3851 |
12 Dec 19 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.16.3 |
3851 |
12 Dec 19 |
peter |
142 |
|
3840 |
13 Aug 19 |
peter |
version 0.16.2 (released 13 August 2019) |
3840 |
13 Aug 19 |
peter |
- utility::Aligner::Cigar::begin(void) and ::end(void) are now |
3840 |
13 Aug 19 |
peter |
implemented (see bug #929) |
3840 |
13 Aug 19 |
peter |
- Fixed bug in GFF2 parser when attribute field had space after a |
3840 |
13 Aug 19 |
peter |
semicolon (bug #928) |
3840 |
13 Aug 19 |
peter |
148 |
|
3840 |
13 Aug 19 |
peter |
A complete list of closed tickets can be found here [[br]] |
3840 |
13 Aug 19 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.16.2 |
3840 |
13 Aug 19 |
peter |
151 |
|
3832 |
06 Aug 19 |
peter |
version 0.16.1 (released 6 August 2019) |
3832 |
06 Aug 19 |
peter |
- Fixed a bug that PriorityQueue could only store unique elements (see #927) |
3832 |
06 Aug 19 |
peter |
154 |
|
3832 |
06 Aug 19 |
peter |
A complete list of closed tickets can be found here [[br]] |
3832 |
06 Aug 19 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.16.1 |
3832 |
06 Aug 19 |
peter |
157 |
|
3823 |
16 Jul 19 |
peter |
version 0.16 (released 16 July 2019) |
3748 |
14 Aug 18 |
peter |
- Constructor SVD(const Matrix&) is now declared explicit |
3784 |
09 Jan 19 |
peter |
- Macros in yat_am_macros.m4 updated to match changes in |
3784 |
09 Jan 19 |
peter |
autoconf-archive-2019.01.06 |
3707 |
16 Oct 17 |
peter |
162 |
|
3707 |
16 Oct 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3707 |
16 Oct 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.16 |
3707 |
16 Oct 17 |
peter |
165 |
|
3705 |
15 Oct 17 |
peter |
yat 0.15.x series from http://dev.thep.lu.se/yat/svn/branches/0.15-stable |
3705 |
15 Oct 17 |
peter |
167 |
|
3743 |
12 Jul 18 |
peter |
version 0.15.1 (released 12 July 2018) |
3743 |
12 Jul 18 |
peter |
- Fixed bug in calculation of exact p_value when one element was |
3743 |
12 Jul 18 |
peter |
zero (bug #908) |
3743 |
12 Jul 18 |
peter |
- Fixed usage of GSL_error, so 'status' is propagated correctly (see r3737) |
3743 |
12 Jul 18 |
peter |
172 |
|
3743 |
12 Jul 18 |
peter |
A complete list of closed tickets can be found here [[br]] |
3743 |
12 Jul 18 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.15.1 |
3743 |
12 Jul 18 |
peter |
175 |
|
3713 |
09 Nov 17 |
peter |
version 0.15 (released 9 November 2017) |
3713 |
09 Nov 17 |
peter |
- New configure option '--enable-cxx11' New public macros |
3713 |
09 Nov 17 |
peter |
YAT_WITH_CXX11 and YAT_WITHOUT_CXX11, which allow user to enable |
3713 |
09 Nov 17 |
peter |
or disable, respectively, certain c++11 features such as move |
3713 |
09 Nov 17 |
peter |
constructors (see ticket #878) |
3688 |
06 Sep 17 |
peter |
- Matrix*Vector now returns a MatrixExpression, which can be |
3688 |
06 Sep 17 |
peter |
converted to a Vector implicitely. The change causes, however, |
3688 |
06 Sep 17 |
peter |
problems with GCC4 as described in ticket #897. |
3688 |
06 Sep 17 |
peter |
184 |
|
3566 |
04 Jan 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3566 |
04 Jan 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.15 |
3566 |
04 Jan 17 |
peter |
187 |
|
3564 |
04 Jan 17 |
peter |
yat 0.14.x series from http://dev.thep.lu.se/yat/svn/branches/0.14-stable |
3564 |
04 Jan 17 |
peter |
189 |
|
3698 |
25 Sep 17 |
peter |
version 0.14.4 (released 25 September 2017) |
3698 |
25 Sep 17 |
peter |
- BamWriteIterator default constructor is now implemented (bug #894) |
3698 |
25 Sep 17 |
peter |
- Fixed bug that InBamFile::n_mapped(tid) and |
3698 |
25 Sep 17 |
peter |
InBamFile::n_unmapped(tid) threw when tid contained no reads (#895) |
3698 |
25 Sep 17 |
peter |
- utility::basename("") now returns "." (bug #893) |
3698 |
25 Sep 17 |
peter |
195 |
|
3698 |
25 Sep 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3698 |
25 Sep 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14.4 |
3698 |
25 Sep 17 |
peter |
198 |
|
3636 |
22 Mar 17 |
peter |
version 0.14.3 (released 22 March 2017) |
3636 |
22 Mar 17 |
peter |
- Fixed code so it compiles against HTSlib 1.4 (see r3662) |
3636 |
22 Mar 17 |
peter |
201 |
|
3636 |
22 Mar 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3636 |
22 Mar 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14.3 |
3636 |
22 Mar 17 |
peter |
204 |
|
3628 |
08 Mar 17 |
peter |
version 0.14.2 (released 8 March 2017) |
3628 |
08 Mar 17 |
peter |
- Bug fixed in omic::dna_reverse_complement_copy (see bug #886) |
3628 |
08 Mar 17 |
peter |
207 |
|
3628 |
08 Mar 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3628 |
08 Mar 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14.2 |
3628 |
08 Mar 17 |
peter |
210 |
|
3623 |
09 Feb 17 |
peter |
version 0.14.1 (released 8 February 2017) |
3623 |
09 Feb 17 |
peter |
- Fixed bug in element-by-element operations in VectorMutable such |
3623 |
09 Feb 17 |
peter |
as operator+=, operator-=, ::mul(), and ::div(), when underlying |
3623 |
09 Feb 17 |
peter |
data structures of lhs and rhs overlap such that elements in rhs |
3623 |
09 Feb 17 |
peter |
are affected by the operation on lhs before they have been used on |
3623 |
09 Feb 17 |
peter |
rhs (bug #884). |
3623 |
09 Feb 17 |
peter |
217 |
|
3623 |
09 Feb 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3623 |
09 Feb 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14.1 |
3623 |
09 Feb 17 |
peter |
220 |
|
3579 |
16 Jan 17 |
peter |
version 0.14 (released 16 January 2017) |
3548 |
01 Jan 17 |
peter |
- The concept 'Distance' now requires that operator() works on |
3548 |
01 Jan 17 |
peter |
iterator that are readable and forward traversal, i.e., the |
3548 |
01 Jan 17 |
peter |
previously implicit requirement that iterator's reference type is |
3548 |
01 Jan 17 |
peter |
lvalue is dropped (ticket #873) |
3485 |
23 Mar 16 |
peter |
- libbam support is marked deprecated; use htslib. |
3485 |
23 Mar 16 |
peter |
- A new (private) pure virtual function assign(const VectorBase&) |
3467 |
10 Feb 16 |
peter |
was added in VectorMutable. (ticket #840) |
3459 |
21 Jan 16 |
peter |
- WeightedIterator is std::input_iterator_tag (ticket #803, r3459) |
3442 |
24 Nov 15 |
peter |
- Fisher::p_value exact is modified and the summation now runs over |
3442 |
24 Nov 15 |
peter |
i for which P(i)<=P(k). (#841) |
3419 |
25 May 15 |
peter |
232 |
|
3419 |
25 May 15 |
peter |
A complete list of closed tickets can be found here [[br]] |
3419 |
25 May 15 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14 |
3419 |
25 May 15 |
peter |
235 |
|
3416 |
25 May 15 |
peter |
yat 0.13.x series from http://dev.thep.lu.se/yat/svn/branches/0.13-stable |
3416 |
25 May 15 |
peter |
237 |
|
3561 |
04 Jan 17 |
peter |
version 0.13.1 (released 4 January 2017) |
3561 |
04 Jan 17 |
peter |
- fixed bug in pkg-config file 'yat.pc' (bug #850) |
3561 |
04 Jan 17 |
peter |
- improved detection of boost thread detection (bug #863) |
3561 |
04 Jan 17 |
peter |
241 |
|
3561 |
04 Jan 17 |
peter |
A complete list of closed tickets can be found here [[br]] |
3561 |
04 Jan 17 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.13 |
3561 |
04 Jan 17 |
peter |
244 |
|
3439 |
20 Nov 15 |
peter |
version 0.13 (released 20 November 2015) |
3439 |
20 Nov 15 |
peter |
- added support for htslib (see ticket #794) |
3439 |
20 Nov 15 |
peter |
- macro `YAT_HAVE_LIBBAM` is #defined if linking against either libbam |
3439 |
20 Nov 15 |
peter |
or libhts. Use #if defined YAT_HAVE_LIBBAM && !defined |
3439 |
20 Nov 15 |
peter |
(YAT_HAVE_HTSLIB) to check that building against libbam. |
3439 |
20 Nov 15 |
peter |
- macro `YAT_BAM_HEADER` is only #defined when building against libbam |
3254 |
09 Jun 14 |
peter |
- utility::get separates types in map and passed key (ticket #799) |
3259 |
09 Jun 14 |
peter |
- utility::Range is deprecated (ticket #786) |
3266 |
03 Jul 14 |
peter |
- AveragerWeighted::n(void) now return 0, when object is empty (ticket #802) |
3393 |
17 Mar 15 |
peter |
- Container2DIterator is now tagged with |
3393 |
17 Mar 15 |
peter |
boost::random_access_traversal_tag (see ticket #803, r3393) |
3393 |
17 Mar 15 |
peter |
- StrideIterator is now tagged with use_default (see ticket #803, r3393) |
3400 |
30 Mar 15 |
peter |
- configure option --without-samtools is deprecated; use --without-htslib |
3220 |
06 May 14 |
peter |
258 |
|
3220 |
06 May 14 |
peter |
A complete list of closed tickets can be found here [[br]] |
3220 |
06 May 14 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.13 |
3220 |
06 May 14 |
peter |
261 |
|
3215 |
06 May 14 |
peter |
yat 0.12.x series from http://dev.thep.lu.se/yat/svn/branches/0.12-stable |
3215 |
06 May 14 |
peter |
263 |
|
3342 |
06 Nov 14 |
peter |
version 0.12.2 (released 6 November 2014) |
3342 |
06 Nov 14 |
peter |
- Fixed bug in Aligner that internal data was not cleared between |
3342 |
06 Nov 14 |
peter |
alignments resulting in incorrect CIGAR (see bug #820) |
3342 |
06 Nov 14 |
peter |
- Fixed QuantileNormalizer seqfault when input had more columns than |
3342 |
06 Nov 14 |
peter |
rows (see bug #815) |
3342 |
06 Nov 14 |
peter |
269 |
|
3342 |
06 Nov 14 |
peter |
A complete list of closed tickets can be found here [[br]] |
3342 |
06 Nov 14 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.12.2 |
3342 |
06 Nov 14 |
peter |
272 |
|
3306 |
21 Aug 14 |
peter |
version 0.12.1 (released 21 August 2014) |
3306 |
21 Aug 14 |
peter |
- bam_calend is buggy in older versions of samtools; configure |
3306 |
21 Aug 14 |
peter |
script checks that bam_calend works as expected; if not use its |
3306 |
21 Aug 14 |
peter |
own implementation (see bug #810) |
3306 |
21 Aug 14 |
peter |
277 |
|
3306 |
21 Aug 14 |
peter |
A complete list of closed tickets can be found here [[br]] |
3306 |
21 Aug 14 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.12.1 |
3306 |
21 Aug 14 |
peter |
280 |
|
3295 |
25 Jul 14 |
peter |
version 0.12 (released 25 July 2014) |
3295 |
25 Jul 14 |
peter |
- BamRead::cigar(const std::vector<uint32_t>&) is deprecated |
3208 |
04 May 14 |
peter |
- Aligner(double, double) is now explicit (see r3207) |
3157 |
05 Jan 14 |
peter |
- GetlineIterator(istream&, char) is now explicit (see r3148) |
3295 |
25 Jul 14 |
peter |
- rename(2) and remove(1) are now implemented (bug #804) |
3117 |
11 Nov 13 |
peter |
286 |
|
3117 |
11 Nov 13 |
peter |
A complete list of closed tickets can be found here [[br]] |
3117 |
11 Nov 13 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.12 |
3117 |
11 Nov 13 |
peter |
289 |
|
3115 |
11 Nov 13 |
peter |
yat 0.11.x series from http://dev.thep.lu.se/yat/svn/branches/0.11-stable |
3115 |
11 Nov 13 |
peter |
291 |
|
3188 |
25 Mar 14 |
peter |
version 0.11.2 (released 25 March 2014) |
3188 |
25 Mar 14 |
peter |
- Fixed bug that error in OutBamFile::write was not detected (see r3163) |
3188 |
25 Mar 14 |
peter |
- Fixed bug that `-lgsl` was not included in `yat-config --libs` (bug #788) |
3188 |
25 Mar 14 |
peter |
295 |
|
3188 |
25 Mar 14 |
peter |
A complete list of closed tickets can be found here [[br]] |
3188 |
25 Mar 14 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.11.2 |
3188 |
25 Mar 14 |
peter |
298 |
|
3144 |
18 Dec 13 |
peter |
version 0.11.1 (released 18 December 2013) |
3144 |
18 Dec 13 |
peter |
- Fixed bug in BamHeader::tid(const std::string&) (see bug #776) |
3144 |
18 Dec 13 |
peter |
301 |
|
3144 |
18 Dec 13 |
peter |
A complete list of closed tickets can be found here [[br]] |
3144 |
18 Dec 13 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.11.1 |
3144 |
18 Dec 13 |
peter |
304 |
|
3130 |
18 Nov 13 |
peter |
version 0.11 (released 18 November 2013) |
3004 |
24 Mar 13 |
peter |
- Fisher::one_sided_p(void) is now deprecated (ticket #689) |
3005 |
24 Mar 13 |
peter |
- PearsonCorrelation::one_sided_p(void) is now deprecated (ticket #689) |
3006 |
01 Apr 13 |
peter |
- PearsonCorrelation::one_sided_p(void) is now deprecated (ticket #689) |
3006 |
01 Apr 13 |
peter |
- ROC::p_value_one_sided(void is now deprecated (ticket #689) |
3023 |
06 Apr 13 |
peter |
- ROC::area(void) is now declared const (ticket #754) |
3024 |
06 Apr 13 |
peter |
- tTest::score(void) is now declared const (ticket #755) |
3056 |
24 Jun 13 |
peter |
- BamReadIterator(4) will now throw if region is invalid (ticket #764) |
3068 |
01 Aug 13 |
peter |
- #defines HAVE_BAM_H, HAVE_BAM_BAM_H, and HAVE_SAMTOOLS_BAM_H have been |
3068 |
01 Aug 13 |
peter |
replaced with corresponding macros with prefix 'YAT_' (see ticket #766) |
3130 |
18 Nov 13 |
peter |
- Bam interface is now more complete (see tickets #746 and #739) |
2921 |
19 Dec 12 |
peter |
316 |
|
2921 |
19 Dec 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2921 |
19 Dec 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.11 |
2921 |
19 Dec 12 |
peter |
319 |
|
2918 |
19 Dec 12 |
peter |
yat 0.10.x series from http://dev.thep.lu.se/yat/svn/branches/0.10-stable |
2918 |
19 Dec 12 |
peter |
321 |
|
3098 |
28 Oct 13 |
peter |
version 0.10.3 (released 28 October 2013) |
3098 |
28 Oct 13 |
peter |
- utility::replace(string&, string, string) is now implemented (bug #768) |
3098 |
28 Oct 13 |
peter |
324 |
|
3098 |
28 Oct 13 |
peter |
A complete list of closed tickets can be found here [[br]] |
3098 |
28 Oct 13 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.10.3 |
3098 |
28 Oct 13 |
peter |
327 |
|
3018 |
04 Apr 13 |
peter |
version 0.10.2 (released 4 April 2013) |
3018 |
04 Apr 13 |
peter |
- On OSX yat is built using flat_namespace (see bug #745) |
3018 |
04 Apr 13 |
peter |
- BamRead::mtid(void) is now implemented (see bug #743) |
3018 |
04 Apr 13 |
peter |
- Fixed bug in KolmogorovSmirnov::remove (see bug #753) |
3018 |
04 Apr 13 |
peter |
332 |
|
3018 |
04 Apr 13 |
peter |
A complete list of closed tickets can be found here [[br]] |
3018 |
04 Apr 13 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.10.2 |
3018 |
04 Apr 13 |
peter |
335 |
|
2960 |
17 Jan 13 |
peter |
version 0.10.1 (released 17 January 2013) |
2960 |
17 Jan 13 |
peter |
- libyat is no longer linked against -lbam (bug #733) |
2960 |
17 Jan 13 |
peter |
- yat.pc now mentions -lbam and -lz (bug #736) |
2960 |
17 Jan 13 |
peter |
- include style <samtools/bam.h> now supported (bug #735) |
2960 |
17 Jan 13 |
peter |
- BamHeader::target_length(1) is now implemented (bug #740) |
2960 |
17 Jan 13 |
peter |
341 |
|
2960 |
17 Jan 13 |
peter |
A complete list of closed tickets can be found here [[br]] |
2960 |
17 Jan 13 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.10.1 |
2960 |
17 Jan 13 |
peter |
344 |
|
2943 |
04 Jan 13 |
peter |
version 0.10 (released 4 January 2013) |
2943 |
04 Jan 13 |
peter |
- samtools wrapper classes (ticket #729) |
2943 |
04 Jan 13 |
peter |
- new utility functions (ticket #717) |
2823 |
30 Aug 12 |
peter |
348 |
|
2823 |
30 Aug 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2823 |
30 Aug 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.10 |
2823 |
30 Aug 12 |
peter |
351 |
|
2838 |
16 Sep 12 |
peter |
yat 0.9.x series from http://dev.thep.lu.se/yat/svn/branches/0.9-stable |
2821 |
30 Aug 12 |
peter |
353 |
|
2916 |
19 Dec 12 |
peter |
version 0.9.2 (released 19 December 2012) |
2916 |
19 Dec 12 |
peter |
- fixed bug how inclusion path is displayed in documentation (bug #728) |
2916 |
19 Dec 12 |
peter |
356 |
|
2916 |
19 Dec 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2916 |
19 Dec 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.9.2 |
2916 |
19 Dec 12 |
peter |
359 |
|
2853 |
23 Sep 12 |
peter |
version 0.9.1 (released 23 September 2012) |
2853 |
23 Sep 12 |
peter |
- bug in Aligner fixed (see bug #724) |
2853 |
23 Sep 12 |
peter |
- Commandline::parse now throws when finding '--no-foo' (bug #723) |
2853 |
23 Sep 12 |
peter |
- yat.pc now mentions Boost::System and Boost::Thread in Libs.private (#722) |
2853 |
23 Sep 12 |
peter |
- documentations is now installed again (bug #721) |
2853 |
23 Sep 12 |
peter |
365 |
|
2853 |
23 Sep 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2853 |
23 Sep 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.9.1 |
2853 |
23 Sep 12 |
peter |
368 |
|
2838 |
16 Sep 12 |
peter |
version 0.9 (released 16 September 2012) |
2815 |
28 Aug 12 |
peter |
- utility::SmithWaterman is deprecated (ticket #706) |
2783 |
21 Jul 12 |
jari |
- yat now depends on boost thread and system library (ticket #568 and #714) |
2779 |
19 Jul 12 |
peter |
- utility::SmartPtr was marked internal (see r2778) |
2793 |
27 Jul 12 |
peter |
- ssearch now takes parameter setting mismatch (r2792) |
3018 |
04 Apr 13 |
peter |
- RNG class is now multithread safe (ticket #568) |
2838 |
16 Sep 12 |
peter |
- The build system now uses a non-recursive Makefile (ticket #703) |
2617 |
05 Nov 11 |
peter |
376 |
|
2617 |
05 Nov 11 |
peter |
A complete list of closed tickets can be found here [[br]] |
2617 |
05 Nov 11 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.9 |
2617 |
05 Nov 11 |
peter |
379 |
|
2615 |
05 Nov 11 |
peter |
yat 0.8.x series from http://dev.thep.lu.se/yat/svn/branches/0.8-stable |
2615 |
05 Nov 11 |
peter |
381 |
|
2798 |
27 Jul 12 |
peter |
version 0.8.2 (released 27 July 2012) |
2798 |
27 Jul 12 |
peter |
- Fixed bug in operator+= in Averager and AveragerWeighted (bug #709) |
2798 |
27 Jul 12 |
peter |
384 |
|
2798 |
27 Jul 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2798 |
27 Jul 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.8.2 |
2798 |
27 Jul 12 |
peter |
387 |
|
2798 |
27 Jul 12 |
peter |
388 |
|
2703 |
12 Mar 12 |
peter |
version 0.8.1 (released 12 March 2012) |
2703 |
12 Mar 12 |
peter |
- Fixed bug that GFF::attribute was only loaded first time (see bug #697) |
2703 |
12 Mar 12 |
peter |
391 |
|
2703 |
12 Mar 12 |
peter |
A complete list of closed tickets can be found here [[br]] |
2703 |
12 Mar 12 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.8.1 |
2703 |
12 Mar 12 |
peter |
394 |
|
2703 |
12 Mar 12 |
peter |
395 |
|
2673 |
03 Dec 11 |
peter |
version 0.8 (released 2 December 2011) |
2612 |
04 Nov 11 |
peter |
- Rule for when to use approximation in ROC::p_value modified (ticket #677) |
2578 |
04 Oct 11 |
peter |
- Discrete::seed, Continuous::seed, Discrete::seed_from_devurandom, |
2578 |
04 Oct 11 |
peter |
and Continuous::seed_from_devurandom are deprecated (issue #674) |
2575 |
02 Oct 11 |
peter |
- configure supports --enable-silent-rules (#654) |
2531 |
28 Jul 11 |
peter |
- Macros YAT_CPP_ADD_FLAG, YAT_CXX_ADD_FLAG and YAT_LD_ADD_FLAG now require |
2531 |
28 Jul 11 |
peter |
macros provided in ax_check*flag.m4 and ax_append*flags.m4(r2524) |
2460 |
03 Apr 11 |
peter |
- Exception classes inherit from yat::utility::runtime_error (r2459) |
2463 |
11 Apr 11 |
peter |
- deprecated configure option `--with-gsl-prefix` is removed |
2463 |
11 Apr 11 |
peter |
- deprecated configure option `--with-gsl-exec-prefix` is removed |
2489 |
27 May 11 |
peter |
- changed behavior of configure option `--htmldir` (r2487) |
2393 |
06 Jan 11 |
peter |
407 |
|
2393 |
06 Jan 11 |
peter |
A complete list of closed tickets can be found here [[br]] |
2393 |
06 Jan 11 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.8 |
2393 |
06 Jan 11 |
peter |
410 |
|
2393 |
06 Jan 11 |
peter |
411 |
|
2390 |
06 Jan 11 |
peter |
yat 0.7.x series from http://dev.thep.lu.se/yat/svn/branches/0.7-stable |
2390 |
06 Jan 11 |
peter |
413 |
|
2601 |
30 Oct 11 |
peter |
version 0.7.3 (released 30 October 2011) |
2601 |
30 Oct 11 |
peter |
- ROC::area no longer crashes when no data have been added (bug #669) |
2601 |
30 Oct 11 |
peter |
- namespace classifier is no included in doxygen input again (bug #667) |
2601 |
30 Oct 11 |
peter |
417 |
|
2601 |
30 Oct 11 |
peter |
A complete list of closed tickets can be found here [[br]] |
2601 |
30 Oct 11 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7.3 |
2601 |
30 Oct 11 |
peter |
420 |
|
2601 |
30 Oct 11 |
peter |
421 |
|
2470 |
12 Apr 11 |
peter |
version 0.7.2 (released 12 April 2011) |
2470 |
12 Apr 11 |
peter |
- omic::Codon("ATG").amino_acid() now return 'M' (bug #664) |
2470 |
12 Apr 11 |
peter |
- median now works on empty ranges (bug #660) |
2470 |
12 Apr 11 |
peter |
- fixed bug percentiler sometimes zero weight elements (r2466) |
2470 |
12 Apr 11 |
peter |
426 |
|
2470 |
12 Apr 11 |
peter |
A complete list of closed tickets can be found here [[br]] |
2470 |
12 Apr 11 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7.2 |
2470 |
12 Apr 11 |
peter |
429 |
|
2470 |
12 Apr 11 |
peter |
430 |
|
2411 |
13 Jan 11 |
peter |
version 0.7.1 (released 13 January 2011) |
2411 |
13 Jan 11 |
peter |
- Fixed compiler (gcc 3) error in Histogram.cc (issue #649) |
2411 |
13 Jan 11 |
peter |
- Fixed compiler warning in concept_check.h (issue #648) |
2411 |
13 Jan 11 |
peter |
434 |
|
2411 |
13 Jan 11 |
peter |
A complete list of closed tickets can be found here [[br]] |
2411 |
13 Jan 11 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7.1 |
2411 |
13 Jan 11 |
peter |
437 |
|
2411 |
13 Jan 11 |
peter |
438 |
|
2400 |
08 Jan 11 |
peter |
version 0.7 (released 8 January 2011) |
2383 |
22 Dec 10 |
peter |
- new namespace theplu::yat::omic |
2383 |
22 Dec 10 |
peter |
- Constructors *Lookup(Matrix, Index, bool) are deprecated (#543) |
2297 |
12 Jul 10 |
peter |
- dvi, ps and pdf docs are no longer generated |
2248 |
22 Apr 10 |
peter |
- utility::load functions now work with std::string as well. |
2163 |
20 Jan 10 |
peter |
444 |
|
2163 |
20 Jan 10 |
peter |
A complete list of closed tickets can be found here [[br]] |
2163 |
20 Jan 10 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7 |
2163 |
20 Jan 10 |
peter |
447 |
|
2163 |
20 Jan 10 |
peter |
448 |
|
2160 |
19 Jan 10 |
peter |
yat 0.6.x series from http://dev.thep.lu.se/yat/svn/branches/0.6-stable |
2160 |
19 Jan 10 |
peter |
450 |
|
2382 |
21 Dec 10 |
peter |
Version 0.6.3 (released 21 December 2010) |
2382 |
21 Dec 10 |
peter |
452 |
|
2382 |
21 Dec 10 |
peter |
- fixed overflow in statistics::Fisher (#638) |
2382 |
21 Dec 10 |
peter |
- fixed bug that double was hard-coded in function load<T>(6) (r2271) |
2382 |
21 Dec 10 |
peter |
455 |
|
2382 |
21 Dec 10 |
peter |
A complete list of closed tickets can be found here [[br]] |
2382 |
21 Dec 10 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.3 |
2382 |
21 Dec 10 |
peter |
458 |
|
2257 |
18 May 10 |
peter |
Version 0.6.2 (released 18 May 2010) |
2257 |
18 May 10 |
peter |
460 |
|
2257 |
18 May 10 |
peter |
- fixed bug with merge when result is weighted (r2251) |
2257 |
18 May 10 |
peter |
462 |
|
2257 |
18 May 10 |
peter |
A complete list of closed tickets can be found here [[br]] |
2257 |
18 May 10 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.2 |
2257 |
18 May 10 |
peter |
465 |
|
2217 |
14 Mar 10 |
peter |
Version 0.6.1 (released 14 March 2010) |
2217 |
14 Mar 10 |
peter |
467 |
|
2217 |
14 Mar 10 |
peter |
- fixed bug with `yat-config --ldflags` (#615) |
2217 |
14 Mar 10 |
peter |
- fixed bug in FileUtil::permission when file does not exist (#617) |
2217 |
14 Mar 10 |
peter |
470 |
|
2217 |
14 Mar 10 |
peter |
A complete list of closed tickets can be found here [[br]] |
2217 |
14 Mar 10 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.1 |
2217 |
14 Mar 10 |
peter |
473 |
|
2202 |
21 Feb 10 |
peter |
Version 0.6 (released 21 February 2010) |
1826 |
24 Feb 09 |
peter |
475 |
|
2153 |
17 Jan 10 |
peter |
- Boost 1.35 is now required (#603) |
2129 |
23 Dec 09 |
peter |
- new configure option `--with-gsl` (#544) |
2129 |
23 Dec 09 |
peter |
- configure option `--with-gsl-prefix` is deprecated (#544) |
2129 |
23 Dec 09 |
peter |
- configure option `--with-gsl-exec-prefix` is deprecated (#544) |
2129 |
23 Dec 09 |
peter |
- Behavior of operator==(DataWeightProxy, DataWeightProxy) is modified (#578) |
2089 |
21 Oct 09 |
peter |
- several constructors in namespace random are now declared explicit (#571) |
2068 |
17 Sep 09 |
peter |
- pair_first_iterator and pair_second_iterator now work with |
2068 |
17 Sep 09 |
peter |
const_iterator (ticket:562) |
2065 |
16 Sep 09 |
peter |
- Passing by const& in KolmogorovSmirnov::Element::operator< (r2064) |
2059 |
11 Sep 09 |
peter |
- classes OptionInFile and OptionOutFile are deprecated (ticket:521) |
2003 |
13 Jun 09 |
peter |
- DataWeight comparison operators were changed in case of NaN (ticket:536) |
1940 |
04 May 09 |
peter |
- new option --libs-without-cblas in yat-config (ticket:523) |
1937 |
01 May 09 |
peter |
- blas is no longer hard-coded into libyat.so and libyat.la (ticket:518) |
1863 |
13 Mar 09 |
peter |
- using unsigned long int (rather than signed) in SVN::max_epoch (ticket:506) |
1863 |
13 Mar 09 |
peter |
490 |
|
1826 |
24 Feb 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
1826 |
24 Feb 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6 |
1826 |
24 Feb 09 |
peter |
493 |
|
2138 |
24 Dec 09 |
peter |
Version 0.5.6 (released 24 December 2009) |
2138 |
24 Dec 09 |
peter |
495 |
|
2138 |
24 Dec 09 |
peter |
- Fixed bugs in EnsembleBuilder::predict (bugs #567 and #579) |
2138 |
24 Dec 09 |
peter |
- Corrected dependency libs in libyat.la (bug #573) |
2138 |
24 Dec 09 |
peter |
498 |
|
2138 |
24 Dec 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
2138 |
24 Dec 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.6 |
2138 |
24 Dec 09 |
peter |
501 |
|
2103 |
06 Nov 09 |
peter |
Version 0.5.5 (released 5 November 2009) |
2103 |
06 Nov 09 |
peter |
503 |
|
2103 |
06 Nov 09 |
peter |
- SVM::predict is calculated as geometric distance (issue #542) |
2103 |
06 Nov 09 |
peter |
- detection of GSL is improved (issue #558) |
2103 |
06 Nov 09 |
peter |
506 |
|
2103 |
06 Nov 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
2103 |
06 Nov 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.5 |
2103 |
06 Nov 09 |
peter |
509 |
|
1998 |
13 Jun 09 |
peter |
Version 0.5.4 (released 12 June 2009) |
1998 |
13 Jun 09 |
peter |
511 |
|
1998 |
13 Jun 09 |
peter |
- Disable dvi ps and pdf documentation in case of doxygen 1.5.8 (issue #548) |
1998 |
13 Jun 09 |
peter |
- improved uninstalled yat-config so it works in VPATH build (issue #539) |
1998 |
13 Jun 09 |
peter |
- improved documentation |
1998 |
13 Jun 09 |
peter |
515 |
|
1998 |
13 Jun 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
1998 |
13 Jun 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.4 |
1998 |
13 Jun 09 |
peter |
518 |
|
1954 |
07 May 09 |
jari |
Version 0.5.3 (released 7 May 2009) |
1954 |
07 May 09 |
jari |
520 |
|
1954 |
07 May 09 |
jari |
- fixed serious bug in qQuantileNormalization related to sorting |
1954 |
07 May 09 |
jari |
with NaNs in vectors (issue #535). VectorMutable and Percentiler |
1954 |
07 May 09 |
jari |
classes were affected with the same issue. |
1954 |
07 May 09 |
jari |
- fixed problem with running configure on 64-bit CentOS (issue #527) |
1954 |
07 May 09 |
jari |
- make check works again (issue #528) |
1954 |
07 May 09 |
jari |
526 |
|
1954 |
07 May 09 |
jari |
A complete list of closed tickets can be found here [[br]] |
1954 |
07 May 09 |
jari |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.3 |
1954 |
07 May 09 |
jari |
529 |
|
1874 |
17 Mar 09 |
peter |
Version 0.5.2 (released 17 March 2009) |
1874 |
17 Mar 09 |
peter |
531 |
|
1874 |
17 Mar 09 |
peter |
- fixed compilation error in IGP (issue #503) |
1874 |
17 Mar 09 |
peter |
- fixed incorrect error message from CommandLine (issue #508) |
1874 |
17 Mar 09 |
peter |
534 |
|
1874 |
17 Mar 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
1874 |
17 Mar 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.2 |
1874 |
17 Mar 09 |
peter |
537 |
|
1839 |
26 Feb 09 |
peter |
Version 0.5.1 (released 26 February 2009) |
1839 |
26 Feb 09 |
peter |
539 |
|
1839 |
26 Feb 09 |
peter |
- libtool version number was corrected (see r1833) |
1839 |
26 Feb 09 |
peter |
541 |
|
1832 |
24 Feb 09 |
peter |
Version 0.5 (released 24 February 2009) |
905 |
27 Sep 07 |
peter |
543 |
|
1818 |
21 Feb 09 |
peter |
- Upgraded to GLPv3 |
1818 |
21 Feb 09 |
peter |
- yat now requires GSL 1.8 or later |
1818 |
21 Feb 09 |
peter |
- yat now requires Boost 1.33 or later |
1651 |
15 Dec 08 |
peter |
- Imlicit conversion between Vector and its Views disabled (ticket:467) |
1818 |
21 Feb 09 |
peter |
- Averager::add and AveragerPair::add take a _signed_ long (ticket:361) |
1611 |
04 Nov 08 |
peter |
- IteratorPolicy removed (ticket:398) |
1587 |
17 Oct 08 |
peter |
- MatrixLookupWeighted(const MatrixLookup&) modified (ticket:396) |
1465 |
02 Sep 08 |
peter |
- Option::parse and OptionArg::do_parse takes references (ticket:418) |
1312 |
19 May 08 |
peter |
- is_int now depends on numerical_limits for inf and NaN treatment |
1312 |
19 May 08 |
peter |
- Similar for is_float. See revision [1312] for details. |
1321 |
23 May 08 |
peter |
- config.h is no longer installed |
1818 |
21 Feb 09 |
peter |
- Copy and assignment are now allowed for KolmogorovSmirnov |
1818 |
21 Feb 09 |
peter |
- is_int(1), is_float(1), is_float(1) are deprecated use is<T> |
1818 |
21 Feb 09 |
peter |
- percentile(3) is deprecated, use percentile2(3) |
1818 |
21 Feb 09 |
peter |
- Target::operator[] is deprecated, use Target::operator() |
1287 |
24 Apr 08 |
peter |
559 |
|
1619 |
06 Nov 08 |
peter |
A complete list of closed tickets can be found here [[br]] |
1619 |
06 Nov 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5 |
1619 |
06 Nov 08 |
peter |
562 |
|
1746 |
23 Jan 09 |
peter |
Version 0.4.3 (released 23 January 2009) |
1746 |
23 Jan 09 |
peter |
564 |
|
1746 |
23 Jan 09 |
peter |
- Fisher::p_value is now correct (bug #461) |
1746 |
23 Jan 09 |
peter |
- Fisher::oddsratio is now correct (bug #460) |
1746 |
23 Jan 09 |
peter |
567 |
|
1746 |
23 Jan 09 |
peter |
A complete list of closed tickets can be found here [[br]] |
1746 |
23 Jan 09 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.3 |
1746 |
23 Jan 09 |
peter |
570 |
|
1437 |
25 Aug 08 |
peter |
Version 0.4.2 (released 25 August 2008) |
1437 |
25 Aug 08 |
peter |
572 |
|
1437 |
25 Aug 08 |
peter |
- FileUtil can now handle large files (#378) |
1437 |
25 Aug 08 |
peter |
- x variable is trained in regression::Local::fit() (#423) |
1437 |
25 Aug 08 |
peter |
575 |
|
1437 |
25 Aug 08 |
peter |
A complete list of closed tickets can be found here [[br]] |
1437 |
25 Aug 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.2 |
1437 |
25 Aug 08 |
peter |
578 |
|
1303 |
14 May 08 |
peter |
Version 0.4.1 (released 14 May 2008) |
1303 |
14 May 08 |
peter |
580 |
|
1303 |
14 May 08 |
peter |
- Files needed for build of documentation is included in distribution (#365) |
1303 |
14 May 08 |
peter |
582 |
|
1303 |
14 May 08 |
peter |
A complete list of closed tickets can be found here [[br]] |
1437 |
25 Aug 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.1 |
1303 |
14 May 08 |
peter |
585 |
|
1277 |
11 Apr 08 |
jari |
Version 0.4 (released 11 April 2008) |
1277 |
11 Apr 08 |
jari |
587 |
|
1270 |
09 Apr 08 |
peter |
- Class vector was split into Vector, VectorView and VectorConstView |
1270 |
09 Apr 08 |
peter |
- Class matrix was renamed to Matrix |
1270 |
09 Apr 08 |
peter |
- Containers, e.g. Vector, now have iterators. |
1270 |
09 Apr 08 |
peter |
- EnsembleBuilder and SubSetGenerator were refactored and are now templates |
1270 |
09 Apr 08 |
peter |
- SupervisedClassifier is now a pure interface class |
1270 |
09 Apr 08 |
peter |
- SVM is not inherited from SupervisedClassifier |
1270 |
09 Apr 08 |
peter |
- NCC was refactored and is now a template |
1270 |
09 Apr 08 |
peter |
- Distance interfaces against iterators |
933 |
05 Oct 07 |
peter |
- interface of median, percentile, and mad functions are |
933 |
05 Oct 07 |
peter |
modified. They now take iterators rather than containers. |
917 |
30 Sep 07 |
peter |
- is_double(), is_int(), and is_float() return true also when string |
1488 |
10 Sep 08 |
peter |
is a nan or inf. |
917 |
30 Sep 07 |
peter |
- add_values function in Averagers replaced by iterator interface |
917 |
30 Sep 07 |
peter |
601 |
|
905 |
27 Sep 07 |
peter |
A complete list of closed tickets can be found here [[br]] |
1437 |
25 Aug 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4 |
905 |
27 Sep 07 |
peter |
604 |
|
905 |
27 Sep 07 |
peter |
Version 0.3.1 (released 28 April 2007) |
905 |
27 Sep 07 |
peter |
606 |
|
905 |
27 Sep 07 |
peter |
- Bugfix release |
905 |
27 Sep 07 |
peter |
608 |
|
905 |
27 Sep 07 |
peter |
A complete list of closed tickets can be found here [[br]] |
1437 |
25 Aug 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.3.1 |
905 |
27 Sep 07 |
peter |
611 |
|
905 |
27 Sep 07 |
peter |
Version 0.3 (released 9 April 2007) |
905 |
27 Sep 07 |
peter |
613 |
|
905 |
27 Sep 07 |
peter |
- First public release |
905 |
27 Sep 07 |
peter |
615 |
|
905 |
27 Sep 07 |
peter |
A complete list of closed tickets can be found here [[br]] |
1437 |
25 Aug 08 |
peter |
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.3+%28Public+release%29 |
905 |
27 Sep 07 |
peter |
618 |
|
905 |
27 Sep 07 |
peter |
619 |
|
905 |
27 Sep 07 |
peter |
620 |
|
905 |
27 Sep 07 |
peter |
621 |
---------------------------------------------------------------------- |
905 |
27 Sep 07 |
peter |
622 |
{{{ |
2119 |
12 Dec 09 |
peter |
Copyright (C) 2003, 2006 Jari Häkkinen |
4359 |
23 Aug 23 |
peter |
Copyright (C) 2007 Peter Johansson |
4359 |
23 Aug 23 |
peter |
Copyright (C) 2008, 2009 Jari Häkkinen, Peter Johansson |
2787 |
23 Jul 12 |
peter |
Copyright (C) 2010, 2011 Peter Johansson |
2787 |
23 Jul 12 |
peter |
Copyright (C) 2012 Jari Häkkinen, Peter Johansson |
4308 |
10 Feb 23 |
peter |
Copyright (C) 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023 Peter Johansson |
675 |
10 Oct 06 |
jari |
629 |
|
1437 |
25 Aug 08 |
peter |
This file is part of yat library, http://dev.thep.lu.se/yat |
675 |
10 Oct 06 |
jari |
631 |
|
675 |
10 Oct 06 |
jari |
The yat library is free software; you can redistribute it and/or |
675 |
10 Oct 06 |
jari |
modify it under the terms of the GNU General Public License as |
1486 |
09 Sep 08 |
jari |
published by the Free Software Foundation; either version 3 of the |
675 |
10 Oct 06 |
jari |
License, or (at your option) any later version. |
675 |
10 Oct 06 |
jari |
636 |
|
675 |
10 Oct 06 |
jari |
The yat library is distributed in the hope that it will be useful, but |
675 |
10 Oct 06 |
jari |
WITHOUT ANY WARRANTY; without even the implied warranty of |
675 |
10 Oct 06 |
jari |
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
675 |
10 Oct 06 |
jari |
General Public License for more details. |
675 |
10 Oct 06 |
jari |
641 |
|
675 |
10 Oct 06 |
jari |
You should have received a copy of the GNU General Public License |
1487 |
10 Sep 08 |
jari |
along with yat. If not, see <http://www.gnu.org/licenses/>. |
905 |
27 Sep 07 |
peter |
644 |
}}} |
905 |
27 Sep 07 |
peter |
645 |
---------------------------------------------------------------------- |