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test/vcf_file2.cc

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Rev	Date	Author	Line
3763	19 Oct 18	peter	1	// $Id$
3763	19 Oct 18	peter	2
3763	19 Oct 18	peter	3	/*
4252	18 Nov 22	peter	4	Copyright (C) 2018, 2022 Peter Johansson
3763	19 Oct 18	peter	5
3763	19 Oct 18	peter	6	This file is part of the yat library, http://dev.thep.lu.se/yat
3763	19 Oct 18	peter	7
3763	19 Oct 18	peter	8	The yat library is free software; you can redistribute it and/or
3763	19 Oct 18	peter	9	modify it under the terms of the GNU General Public License as
3763	19 Oct 18	peter	10	published by the Free Software Foundation; either version 3 of the
3763	19 Oct 18	peter	11	License, or (at your option) any later version.
3763	19 Oct 18	peter	12
3763	19 Oct 18	peter	13	The yat library is distributed in the hope that it will be useful,
3763	19 Oct 18	peter	14	but WITHOUT ANY WARRANTY; without even the implied warranty of
3763	19 Oct 18	peter	15	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3763	19 Oct 18	peter	16	General Public License for more details.
3763	19 Oct 18	peter	17
3763	19 Oct 18	peter	18	You should have received a copy of the GNU General Public License
3763	19 Oct 18	peter	19	along with yat. If not, see <http://www.gnu.org/licenses/>.
3763	19 Oct 18	peter	20	*/
3763	19 Oct 18	peter	21
3763	19 Oct 18	peter	22	#include <config.h>
3763	19 Oct 18	peter	23
3763	19 Oct 18	peter	24	#include "Suite.h"
3763	19 Oct 18	peter	25
3763	19 Oct 18	peter	26	#include "yat/omic/VcfFile.h"
3763	19 Oct 18	peter	27	#include "yat/omic/VcfHeader.h"
3763	19 Oct 18	peter	28
3763	19 Oct 18	peter	29	using namespace theplu::yat;
3763	19 Oct 18	peter	30
3763	19 Oct 18	peter	31	int main(int argc, char* argv[])
3763	19 Oct 18	peter	32	{
3763	19 Oct 18	peter	33	test::Suite suite(argc, argv);
4252	18 Nov 22	peter	34	suite.require_foo_vcf_gz();
3763	19 Oct 18	peter	35	omic::VcfFile vcf("../../data/foo.vcf.gz");
3763	19 Oct 18	peter	36	std::ostringstream ss;
3763	19 Oct 18	peter	37	ss << vcf.header();
3763	19 Oct 18	peter	38	return suite.return_value();
3763	19 Oct 18	peter	39	}