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## $Id$ |
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# Copyright (C) 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2018, 2020, 2021, 2023 Peter Johansson |
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# |
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# This file is part of the yat library, http://dev.thep.lu.se/yat |
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# |
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# The yat library is free software; you can redistribute it and/or |
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# modify it under the terms of the GNU General Public License as |
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# published by the Free Software Foundation; either version 3 of the |
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# License, or (at your option) any later version. |
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# |
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# The yat library is distributed in the hope that it will be useful, |
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# but WITHOUT ANY WARRANTY; without even the implied warranty of |
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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# General Public License for more details. |
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# |
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# You should have received a copy of the GNU General Public License |
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# along with yat. If not, see <http://www.gnu.org/licenses/>. |
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|
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30 Mar 15 |
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if HAVE_HTSLIB |
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yat_libyat_la_SOURCES += yat/omic/BamFile.cc |
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yat_libyat_la_SOURCES += yat/omic/BamHeader.cc |
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yat_libyat_la_SOURCES += yat/omic/BamPair.cc |
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yat_libyat_la_SOURCES += yat/omic/BamRead.cc |
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10 Mar 13 |
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yat_libyat_la_SOURCES += yat/omic/BamReadFilter.cc |
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yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc |
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yat_libyat_la_SOURCES += yat/omic/BamReadSequenceIterator.cc |
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yat_libyat_la_SOURCES += yat/omic/BamRegion.cc |
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03 Dec 12 |
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yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc |
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yat_libyat_la_SOURCES += yat/omic/Fasta.cc |
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yat_libyat_la_SOURCES += yat/omic/hts.cc |
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endif |
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yat_libyat_la_SOURCES += yat/omic/Codon.cc |
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yat_libyat_la_SOURCES += yat/omic/DNA.cc |
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yat_libyat_la_SOURCES += yat/omic/DnaComplementer.cc |
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yat_libyat_la_SOURCES += yat/omic/GenomicPosition.cc |
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yat_libyat_la_SOURCES += yat/omic/GFF.cc |
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yat_libyat_la_SOURCES += yat/omic/GFF2.cc |
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yat_libyat_la_SOURCES += yat/omic/GFF3.cc |
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yat_libyat_la_SOURCES += yat/omic/phred.cc |
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yat_libyat_la_SOURCES += yat/omic/VCF.cc |
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yat_libyat_la_SOURCES += yat/omic/VcfCompare.cc |
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yat_libyat_la_SOURCES += yat/omic/VcfFile.cc |
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yat_libyat_la_SOURCES += yat/omic/VcfHeader.cc |
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yat_libyat_la_SOURCES += yat/omic/VcfIterator.cc |
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|
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nobase_include_HEADERS += $(srcdir)/yat/omic/algorithm.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamFile.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamPair.h |
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31 Mar 21 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairBuffer.h |
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08 Mar 14 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator.h |
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12 Mar 20 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator2.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamRead.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadFilter.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadSequenceIterator.h |
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24 Jan 23 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamRegion.h |
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03 Dec 12 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h |
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04 Jan 13 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/config_bam.h |
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12 Jul 12 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/Codon.h |
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12 Jul 12 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/DNA.h |
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08 Mar 16 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/DnaComplementer.h |
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08 Mar 16 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/Fasta.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/GenomicPosition.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/GFF.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/GFF2.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/GFF3.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/Pileup.h |
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07 Oct 14 |
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nobase_include_HEADERS += $(srcdir)/yat/omic/phred.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/VCF.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/VcfCompare.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/VcfFile.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/VcfHeader.h |
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nobase_include_HEADERS += $(srcdir)/yat/omic/VcfIterator.h |